PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G124900.1.p | ||||||||
Common Name | GLYMA_10G124900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 144aa MW: 16716.8 Da PI: 4.4758 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.3 | 8.6e-07 | 71 | 120 | 2 | 53 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 fY Y++ GF + + ++ +ge+t+++f C++eg ++ ++ + e +++ Glyma.10G124900.1.p 71 FYYWYGRANGFVCKSKVLRNC--KGETTQQNFLCYREGVKDYRDITIEMQKH 120 9**********9888887777..8889**************99988333332 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-4 | 71 | 124 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MDIHDDRSGE DNEVARGIED ASHLDGAFEE KVSEKIVINI LLDIVNINLT NIDSNDVKRF 60 DFVDLSVAYL FYYWYGRANG FVCKSKVLRN CKGETTQQNF LCYREGVKDY RDITIEMQKH 120 EEKMIQDVIV DMTKFDIEFK TQV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G124900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | K7LJ07 | 1e-100 | K7LJ07_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G24625.1 | 1e-101 | (Glycine max) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G124900.1.p |