PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G121700.1.p
Common NameGLYMA_10G121700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 760aa    MW: 88744.4 Da    PI: 7.0765
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G121700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.6e-2079166189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +fY+ YAk+ GFsvrks+  ++    e+ ++tfvCs+ g+r+ ++++ ++ r++++e+r+gC+a+++v+ +   ++w+vt  + eHnH l
  Glyma.10G121700.1.p  79 QFYCWYAKMSGFSVRKSHIVRN-SFMETLQQTFVCSCAGYRKVTTSN-TRIRKEKKESRCGCEAMFRVHVHFsMDRWYVTCWNFEHNHVL 166
                          6*****************9999.55569***************9999.9**********************999**************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1779167IPR004330FAR1 DNA binding domain
PfamPF105511.6E-31287381IPR018289MULE transposase domain
PROSITE profilePS509669.644549599IPR007527Zinc finger, SWIM-type
SMARTSM005750.0028574601IPR006564Zinc finger, PMZ-type
PROSITE profilePS501588.532726742IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MSELETTDNF RSFVNGDGVN DDGDYENDDN YQDNVGVQDE EEECISIDSM VDIRQFDMKE  60
ISDEVVRRLD FGDLELAYQF YCWYAKMSGF SVRKSHIVRN SFMETLQQTF VCSCAGYRKV  120
TTSNTRIRKE KKESRCGCEA MFRVHVHFSM DRWYVTCWNF EHNHVLLDLK LSCLLAGHRK  180
MSASNIMQVE NYRKVGIRPP YMCTTFVNQC GGYEKVGFIR KDIYNEEGRM RRQHSSDARG  240
ALKYLYDLRK KEPMMYVSCT ADEESRLQRL FWSDTDSQLL YQVFGDVLAF DATYKKNKYL  300
CPFVVFSGVN HHNQTIVFAA AIVTDEMEET YVWLLEQLLV AMKVKAPCSI ITDGDLAMRN  360
AITRVMPGVS HRLCAWHLLR NALSHVRDKH VLKWLKKLML SDFEVVEFEE KWKEMVATFE  420
LEDNSWIAEL YERRMKWSTV HLRGRFFASI RTTSRCEAFH AHVAKYVHSR TNLTDFVEQF  480
QRCLTYFRYR VVVADYSSTY GKEVLQTNLL SLERSGDELF TKEMFQLFQS YLCRTIKLRV  540
VDCKEMATFS VFIVVKYCSG SVWRVSHCPS MVEFTCTCMR MQSIGLPCDH ILTVLVSLNF  600
MEFPSSLVLN RWSKLATEQI KDKYPDSAMY WDSQLMAKYA TLVEVSREVC AAAYRDEEEY  660
DKMLHFLSNE ATRLKSKQNN EHCVDDNQMH QQDDDFAGIL DPVVVRSKGC GQVEMDESGR  720
QRRIQKCRQC GGIGHNKRSC TNRPRNVQIS KETEQLHPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G121700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352100.0AC235210.1 Glycine max strain Williams 82 clone GM_WBb0019I19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590087.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0HZT40.0A0A0R0HZT4_SOYBN; Uncharacterized protein
STRINGGLYMA11G29330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-83FAR1-related sequence 5