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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G119100.1.p | ||||||||
Common Name | GLYMA_10G119100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 25154.1 Da PI: 6.6324 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 131 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+++ +Aaka++ a+ k++g Glyma.10G119100.1.p 131 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 181 8********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.89E-30 | 130 | 189 | No hit | No description |
SMART | SM00380 | 1.7E-36 | 131 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 131 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 131 | 190 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.316 | 131 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-13 | 131 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-13 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-13 | 171 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTTAEKTSNL DLIRQHLFGE NIISDSSSFV SNLHHHPVKL EPPSSPEFDF TSYILDNNTS 60 SNFFTFLEGY DLVADMKFVI DSDNTTTMVI PSKEVIKKCN INSPEEQPMV SSSSEEKPTM 120 KKSEHYDEAK RYRGVRRRPW GKFAAEIRDP TRKGTRVWLG TFDSEIDAAK AYDCAAFKMR 180 GQKAILNFPL EAGESDPKPN NSCGRKRRRD QNHDHEFELP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-28 | 130 | 190 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-28 | 128 | 196 | 2 | 70 | ATERF1 |
3gcc_A | 5e-28 | 128 | 196 | 2 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 208 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36387 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G119100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091436 | 0.0 | BT091436.1 Soybean clone JCVI-FLGm-8A1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235286.2 | 1e-166 | DNA-binding domain-containing protein | ||||
Refseq | XP_028183011.1 | 1e-166 | ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A0B2REH8 | 1e-164 | A0A0B2REH8_GLYSO; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | I1LAE7 | 1e-164 | I1LAE7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G23460.1 | 1e-165 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G119100.1.p |