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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G118900.1.p | ||||||||
Common Name | GLYMA_10G118900, LOC100816416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31413 Da PI: 9.515 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.2e-21 | 125 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAaka+++a+ k++g Glyma.10G118900.1.p 125 HYRGVRRRP-WGKYAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDKAAFKMRG 175 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-33 | 124 | 184 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.27E-32 | 124 | 183 | No hit | No description |
Pfam | PF00847 | 1.1E-14 | 125 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.434 | 125 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 125 | 185 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.3E-38 | 125 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 165 | 185 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MQSSISQSDI FITDYLVPQE VPFQFQFQDM SKNDNNMPMN HTNNNLQMPQ ITSFSKPPRS 60 SSNLSNRKPS LKNITIPSIT SGLATAMSQT TATTTTIATT MYNNNQVSSS SFSSDETNNT 120 KDDKHYRGVR RRPWGKYAAE IRDPNRKGSR VWLGTFDTAI EAAKAYDKAA FKMRGSKAIL 180 NFPLEIGSDQ SKEESSSSSS SVSSSSIVIK VGVKREREEE SERKNNYEKS EFNNNSNSNK 240 HVKKEECPLT PSCWKGFWDT DVMGTIFSVP PLSPLSPLMV V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-32 | 124 | 186 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-31 | 124 | 190 | 4 | 70 | ATERF1 |
3gcc_A | 1e-31 | 124 | 190 | 4 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55656 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| seed coat| somatic embryo| stem| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G118900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094806 | 0.0 | BT094806.1 Soybean clone JCVI-FLGm-6O21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535939.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
Refseq | XP_028185081.1 | 0.0 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A0B2REI9 | 0.0 | A0A0B2REI9_GLYSO; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A0R4J494 | 0.0 | A0A0R4J494_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G23440.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 6e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G118900.1.p |
Entrez Gene | 100816416 |