PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G101900.1.p
Common NameGLYMA_10G101900, LOC102669436
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 231aa    MW: 25435.7 Da    PI: 9.4768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G101900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0585107123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k F+++  L  H++ H
  Glyma.10G101900.1.p  85 FSCKFCDKKFPSSQALGGHQNAH 107
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.9E-578111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-682112No hitNo description
PROSITE profilePS5015711.19885112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSDELFVGGV ESRKLKRKIE EASSTDVVDS EFVLSLGLGN NKMTGESSSN FLCKSLKGHK  60
ESPCFASKLV ENTNNQVIRP KQRQFSCKFC DKKFPSSQAL GGHQNAHKRE RVLSRINKDM  120
GTFGLGAHMC SYSSIPHQYP FRGPTSLYYG ANMHPMAHMS VMSWPHFVPG SSNQGLHNTS  180
ISGQRFGMTN PWGISAETPP NVYHRDVVFG AEHNQVPSLD VAHRATNGSF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G101900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590019.11e-174zinc finger protein 8
RefseqXP_028184720.11e-174zinc finger protein 8-like
TrEMBLA0A0B2QZP11e-172A0A0B2QZP1_GLYSO; Zinc finger protein 4
TrEMBLK7LIM71e-172K7LIM7_SOYBN; Uncharacterized protein
STRINGGLYMA10G19490.21e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-14C2H2 family protein