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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G082800.1.p | ||||||||
Common Name | GLYMA_10G082800, LOC100794755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 328aa MW: 36281.8 Da PI: 9.6343 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.7 | 1.1e-29 | 162 | 217 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p YVNaKQy++I++RR +Rak+ e+k+ +k rkpy+heSRh hAlrRpRg+gGrF Glyma.10G082800.1.p 162 GPTYVNAKQYHGIIRRRLSRAKAVLENKM-IKRRKPYMHESRHLHALRRPRGCGGRF 217 79***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.9E-33 | 159 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.358 | 160 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-25 | 163 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-21 | 163 | 185 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-21 | 194 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MAMQTVYLKE HEGLVYNSVG QLSSVTSAPW WSALGSQPVY GEYCGQIKPF SFEISNYVDQ 60 FPAGKQAVRG VEQLLDKGHT TTQFTIFPDD CKMSGDAENP QATLSLQSSL AEPHNRFEIG 120 FNQPMICAKY PYMDQFYGLF SAFGPQISGR IMLPINLTSD DGPTYVNAKQ YHGIIRRRLS 180 RAKAVLENKM IKRRKPYMHE SRHLHALRRP RGCGGRFLNT KGSTNGNGRN ESKVNKTGGR 240 QLQSSASQSS EVLHSEVGTL NSSKETNRSS PNISGSEVTS MYSREGFDGF SVNRLGSSVH 300 SLVDMVLSRP LNGLQQYQVT AATLKFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-15 | 163 | 221 | 4 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
4g91_A | 1e-15 | 161 | 220 | 2 | 62 | HAPB protein |
4g92_A | 1e-15 | 161 | 220 | 2 | 62 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 194 | RRRLSRAKAVLENKMIKRRK |
2 | 175 | 195 | RRRLSRAKAVLENKMIKRRKP |
3 | 176 | 195 | RRLSRAKAVLENKMIKRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3634 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G082800.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183106.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Refseq | XP_028183107.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Refseq | XP_028183108.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
TrEMBL | A0A0B2SP75 | 0.0 | A0A0B2SP75_GLYSO; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | K7LI34 | 0.0 | K7LI34_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G10240.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3794 | 34 | 64 |
Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 7e-66 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G082800.1.p |
Entrez Gene | 100794755 |