PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G068900.6.p

Common Name

GLYMA_10G068900, LOC100820163

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

VOZ

Protein Properties

Length: 432aa MW: 47955.4 Da PI: 6.6905

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G068900.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	429.9	3.6e-132	197	415	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rp+qg +w+qdycssfhatlalneg+pg+tpvlrp+gi+lkd+llfaal ak+qgk vgipecegaatakspw Glyma.10G068900.6.p 197 PPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHATLALNEGPPGMTPVLRPGGIGLKDNLLFAALGAKAQGKVVGIPECEGAATAKSPW 286 89************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+elfd ++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp++ fewhlyeyei+++da Glyma.10G068900.6.p 287 NAPELFDTCVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCDAR 376 ************************************************************************************** PP VOZ 181 alyrlelklvdekksakgk..vskdsladlqkklgrlta 217 alyrlelklvd+kks+k+k v++ds+a lqk++g+l+a Glyma.10G068900.6.p 377 ALYRLELKLVDGKKSSKAKivVTSDSVAGLQKHIGSLSA 415 ***************66689**********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MKKISKSSCK SASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDAALL EEQVHQMLRE 60 WKAELNETSP ASSLQQGGSL GSFSTDVYRL LQLCEEEDDA TSPLVAPKSE PNDQIMQAGA 120 KVIVQEGQHQ QEFRLLKECK HSTVGVPNIA ANNLDGTALE YHQFDIKDLD HSFYAGTGFC 180 EEGGVPHISS YLPSVCPPPS AFLGPKCALW DCPRPVQGLD WCQDYCSSFH ATLALNEGPP 240 GMTPVLRPGG IGLKDNLLFA ALGAKAQGKV VGIPECEGAA TAKSPWNAPE LFDTCVLEGE 300 TIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MNEFGGLKRS YYMDPQPLNL 360 FEWHLYEYEI SKCDARALYR LELKLVDGKK SSKAKIVVTS DSVAGLQKHI GSLSAKGTRQ 420 GDFLSLSRHC E*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MKKISKSSCK SASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDAALL EEQVHQMLRE  60
WKAELNETSP ASSLQQGGSL GSFSTDVYRL LQLCEEEDDA TSPLVAPKSE PNDQIMQAGA  120
KVIVQEGQHQ QEFRLLKECK HSTVGVPNIA ANNLDGTALE YHQFDIKDLD HSFYAGTGFC  180
EEGGVPHISS YLPSVCPPPS AFLGPKCALW DCPRPVQGLD WCQDYCSSFH ATLALNEGPP  240
GMTPVLRPGG IGLKDNLLFA ALGAKAQGKV VGIPECEGAA TAKSPWNAPE LFDTCVLEGE  300
TIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MNEFGGLKRS YYMDPQPLNL  360
FEWHLYEYEI SKCDARALYR LELKLVDGKK SSKAKIVVTS DSVAGLQKHI GSLSAKGTRQ  420
GDFLSLSRHC E*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.42219	0.0	meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G068900.6.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006588834.1	0.0	transcription factor VOZ1 isoform X2
Refseq	XP_028182192.1	0.0	transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	K7LHV1	0.0	K7LHV1_SOYBN; Uncharacterized protein
STRING	GLYMA10G07940.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Glyma.10G068900.6.p
Entrez Gene	100820163

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]