PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G068900.3.p | ||||||||
Common Name | GLYMA_10G068900, LOC100820163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 432aa MW: 47955.4 Da PI: 6.6905 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 429.9 | 3.6e-132 | 197 | 415 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rp+qg +w+qdycssfhatlalneg+pg+tpvlrp+gi+lkd+llfaal ak+qgk vgipecegaatakspw Glyma.10G068900.3.p 197 PPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHATLALNEGPPGMTPVLRPGGIGLKDNLLFAALGAKAQGKVVGIPECEGAATAKSPW 286 89**************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+elfd ++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp++ fewhlyeyei+++da Glyma.10G068900.3.p 287 NAPELFDTCVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCDAR 376 ****************************************************************************************** PP VOZ 181 alyrlelklvdekksakgk..vskdsladlqkklgrlta 217 alyrlelklvd+kks+k+k v++ds+a lqk++g+l+a Glyma.10G068900.3.p 377 ALYRLELKLVDGKKSSKAKivVTSDSVAGLQKHIGSLSA 415 *******************66689************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 432 aa Download sequence Send to blast |
MKKISKSSCK SASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDAALL EEQVHQMLRE 60 WKAELNETSP ASSLQQGGSL GSFSTDVYRL LQLCEEEDDA TSPLVAPKSE PNDQIMQAGA 120 KVIVQEGQHQ QEFRLLKECK HSTVGVPNIA ANNLDGTALE YHQFDIKDLD HSFYAGTGFC 180 EEGGVPHISS YLPSVCPPPS AFLGPKCALW DCPRPVQGLD WCQDYCSSFH ATLALNEGPP 240 GMTPVLRPGG IGLKDNLLFA ALGAKAQGKV VGIPECEGAA TAKSPWNAPE LFDTCVLEGE 300 TIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MNEFGGLKRS YYMDPQPLNL 360 FEWHLYEYEI SKCDARALYR LELKLVDGKK SSKAKIVVTS DSVAGLQKHI GSLSAKGTRQ 420 GDFLSLSRHC E* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.42219 | 0.0 | meristem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G068900.3.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006588834.1 | 0.0 | transcription factor VOZ1 isoform X2 | ||||
Refseq | XP_028182192.1 | 0.0 | transcription factor VOZ1-like isoform X2 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | K7LHV1 | 0.0 | K7LHV1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G07940.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G068900.3.p |
Entrez Gene | 100820163 |
Publications ? help Back to Top | |||
---|---|---|---|
|