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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G068900.10.p | ||||||||
Common Name | GLYMA_10G068900, LOC100820163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | VOZ | ||||||||
Protein Properties | Length: 416aa MW: 46309.5 Da PI: 7.7029 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 430.1 | 3.3e-132 | 147 | 365 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 pppsaflgpkcalwdc+rp+qg +w+qdycssfhatlalneg+pg+tpvlrp+gi+lkd+llfaal ak+qgk vgipecegaataksp Glyma.10G068900.10.p 147 PPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHATLALNEGPPGMTPVLRPGGIGLKDNLLFAALGAKAQGKVVGIPECEGAATAKSP 235 89*************************************************************************************** PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineld 178 wna+elfd ++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp++ fewhlyeyei+++d Glyma.10G068900.10.p 236 WNAPELFDTCVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCD 324 ***************************************************************************************** PP VOZ 179 alalyrlelklvdekksakgk..vskdsladlqkklgrlta 217 a alyrlelklvd+kks+k+k v++ds+a lqk++g+l+a Glyma.10G068900.10.p 325 ARALYRLELKLVDGKKSSKAKivVTSDSVAGLQKHIGSLSA 365 *********************66689************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MKKISKSSCK SASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDAALL EEQVHQMLRE 60 WKAELNETSP ASSLQQGQHQ QEFRLLKECK HSTVGVPNIA ANNLDGTALE YHQFDIKDLD 120 HSFYAGTGFC EEGGVPHISS YLPSVCPPPS AFLGPKCALW DCPRPVQGLD WCQDYCSSFH 180 ATLALNEGPP GMTPVLRPGG IGLKDNLLFA ALGAKAQGKV VGIPECEGAA TAKSPWNAPE 240 LFDTCVLEGE TIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MNEFGGLKRS 300 YYMDPQPLNL FEWHLYEYEI SKCDARALYR LELKLVDGKK SSKAKIVVTS DSVAGLQKHI 360 GSLSAKGRTK LGIGGGVYSA SNRVALQLNA PYQYGLTSSP YDDYVVDNTR DYYVT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.42219 | 0.0 | meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G068900.10.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-180 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006588835.1 | 0.0 | transcription factor VOZ1 isoform X3 | ||||
Refseq | XP_028182193.1 | 0.0 | transcription factor VOZ1-like isoform X3 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | K7LHV3 | 0.0 | K7LHV3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G07940.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G068900.10.p |
Entrez Gene | 100820163 |
Publications ? help Back to Top | |||
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