PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G068900.10.p

Common Name

GLYMA_10G068900, LOC100820163

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

VOZ

Protein Properties

Length: 416aa MW: 46309.5 Da PI: 7.7029

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G068900.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	430.1	3.3e-132	147	365	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 pppsaflgpkcalwdc+rp+qg +w+qdycssfhatlalneg+pg+tpvlrp+gi+lkd+llfaal ak+qgk vgipecegaataksp Glyma.10G068900.10.p 147 PPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHATLALNEGPPGMTPVLRPGGIGLKDNLLFAALGAKAQGKVVGIPECEGAATAKSP 235 89************************************************************************************* PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineld 178 wna+elfd ++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp++ fewhlyeyei+++d Glyma.10G068900.10.p 236 WNAPELFDTCVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCD 324 ************************************************************************************* PP VOZ 179 alalyrlelklvdekksakgk..vskdsladlqkklgrlta 217 a alyrlelklvd+kks+k+k v++ds+a lqk++g+l+a Glyma.10G068900.10.p 325 ARALYRLELKLVDGKKSSKAKivVTSDSVAGLQKHIGSLSA 365 *****************66689**********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MKKISKSSCK SASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDAALL EEQVHQMLRE 60 WKAELNETSP ASSLQQGQHQ QEFRLLKECK HSTVGVPNIA ANNLDGTALE YHQFDIKDLD 120 HSFYAGTGFC EEGGVPHISS YLPSVCPPPS AFLGPKCALW DCPRPVQGLD WCQDYCSSFH 180 ATLALNEGPP GMTPVLRPGG IGLKDNLLFA ALGAKAQGKV VGIPECEGAA TAKSPWNAPE 240 LFDTCVLEGE TIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MNEFGGLKRS 300 YYMDPQPLNL FEWHLYEYEI SKCDARALYR LELKLVDGKK SSKAKIVVTS DSVAGLQKHI 360 GSLSAKGRTK LGIGGGVYSA SNRVALQLNA PYQYGLTSSP YDDYVVDNTR DYYVT*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MKKISKSSCK SASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDAALL EEQVHQMLRE  60
WKAELNETSP ASSLQQGQHQ QEFRLLKECK HSTVGVPNIA ANNLDGTALE YHQFDIKDLD  120
HSFYAGTGFC EEGGVPHISS YLPSVCPPPS AFLGPKCALW DCPRPVQGLD WCQDYCSSFH  180
ATLALNEGPP GMTPVLRPGG IGLKDNLLFA ALGAKAQGKV VGIPECEGAA TAKSPWNAPE  240
LFDTCVLEGE TIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MNEFGGLKRS  300
YYMDPQPLNL FEWHLYEYEI SKCDARALYR LELKLVDGKK SSKAKIVVTS DSVAGLQKHI  360
GSLSAKGRTK LGIGGGVYSA SNRVALQLNA PYQYGLTSSP YDDYVVDNTR DYYVT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.42219	0.0	meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G068900.10.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-180	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006588835.1	0.0	transcription factor VOZ1 isoform X3
Refseq	XP_028182193.1	0.0	transcription factor VOZ1-like isoform X3
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	K7LHV3	0.0	K7LHV3_SOYBN; Uncharacterized protein
STRING	GLYMA10G07940.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Glyma.10G068900.10.p
Entrez Gene	100820163

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]