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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.10G067200.1.p |
| Common Name | GLYMA_10G067200, LOC100814300 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
GRF |
| Protein Properties |
Length: 337aa MW: 37307.6 Da PI: 7.5761 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.10G067200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 76.1 | 3.5e-24 | 136 | 180 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
d+epgrCrRtDGKkWRCs+++++g+k+C+rH+hrgr+rsrk++e+
Glyma.10G067200.1.p 136 DPEPGRCRRTDGKKWRCSKDTVAGQKYCDRHMHRGRNRSRKPVEQ 180
79****************************************997 PP
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| 2 | QLQ | 55.8 | 1.4e-19 | 77 | 112 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
F+ aQ+q+L+ Q+l+++y++a++PvPpeLl++i+k
Glyma.10G067200.1.p 77 CFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKK 112
6*********************************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MDLQLKQWRN QHESEQEQEH YSPNMAKFLS QQQHPPPFPS ALPLFVPEQP NTKVSTLSAF 60
SDSTLPSSPR FPRMESCFSF AQWQELELQA LIFRYMLAGA PVPPELLLPI KKSFLQLYHP 120
PNLLESGYYW RREALDPEPG RCRRTDGKKW RCSKDTVAGQ KYCDRHMHRG RNRSRKPVEQ 180
REGSLSAIDS VSSSHSASFN LLHLGQSSAV AKSDSKSLSR NRDHVDGDGK SNGHVLRHFF 240
DDWPRTLQEP DNGESNGSQN NNSGKCLSMS TPGIDPSDVS LKLTTGYGED ACQAASVGGP 300
LAEALRSSTT SSTSSPTSVL LQLPPSSACE TSFIST*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. |
| Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
| Publications
? help Back to Top |
- Kuijt SJ, et al.
Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
Plant Physiol., 2014. 164(4): p. 1952-66
[PMID:24532604] - Cao Y,Han Y,Jin Q,Lin Y,Cai Y
Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
Front Plant Sci, 2016. 7: p. 1750
[PMID:27933074]
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