PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G066100.1.p
Common NameGLYMA_10G066100, LOC100807323
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 461aa    MW: 51460.5 Da    PI: 4.8184
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G066100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34241162103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++ ++l+ +isw+++g sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++         weF ++ F++gkk
  Glyma.10G066100.1.p  24 FLSKTFDLVDAPTLDPIISWNSTGLSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRGKK 104
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r++s+
  Glyma.10G066100.1.p 105 HLLKNIQRRRSS 116
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.63E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5320113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3621113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3024113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-172447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-176274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-177587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNPNDGNNSP SPKPLEMVNP VPPFLSKTFD LVDAPTLDPI ISWNSTGLSF VVWDPLEFAR  60
IVLPRHFKHN NFSSFVRQLN TYGFRKIDTD KWEFFNEAFQ RGKKHLLKNI QRRRSSQSQP  120
VGSYIGIGSS TEAGGSEVEI EIERLRKEKT MLMEEVVDLQ QEQRRTAHHA GEVNLRLQSA  180
EQRQKQMVSF LAKLIQNPAF LARLRHKKEQ KEIDSPRVVR KFVKQHHETG TTTTAETLQE  240
GQIVRYQPDW RNIAMSSETP KLSSVSIEQS PHYLSQGLAG EMSVVGAEDL TAQIDNIVSD  300
DLAAVHGITP SQEMMIGEGS STFGAEDPLF KGKSVMSPIL EVPPEYFPSF PEGLTKEKKD  360
FQDFSALGTE GMIKLEDIWD SGLNVSGAAL SSGNELWGNH VNYEEFPQFG VTSGMSDSDI  420
WDIGLGSFGI DTWPTDEPSL GETDGQSGQP NEDRSKNFDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-232111817125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201209ARLRHKKEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.298060.0root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G066100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588825.20.0LOW QUALITY PROTEIN: heat stress transcription factor A-3
TrEMBLA0A445IIR90.0A0A445IIR9_GLYSO; Heat stress transcription factor A-3
TrEMBLK7LHS60.0K7LHS6_SOYBN; Uncharacterized protein
STRINGGLYMA10G07620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Representative plantOGRP10024911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-95heat shock transcription factor A3