PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G054700.1.p
Common NameGLYMA_10G054700, LOC100820139
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 321aa    MW: 35691 Da    PI: 6.7582
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G054700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-181462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEde+l ++++++G+g +W + +++ g++R++k+c++rw++yl
  Glyma.10G054700.1.p 14 KGPWSPEEDEKLREYIEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding34.35.4e-1169111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++ Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Glyma.10G054700.1.p  69 GEFSEGEDRIICTLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                          7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.116966IPR017930Myb domain
SuperFamilySSF466897.42E-2811109IPR009057Homeodomain-like
SMARTSM007171.3E-131364IPR001005SANT/Myb domain
PfamPF002496.8E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-241569IPR009057Homeodomain-like
CDDcd001671.96E-101662No hitNo description
SMARTSM007176.3E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129416.21267117IPR017930Myb domain
PfamPF002496.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDEKLREYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNLKHGE FSEGEDRIIC TLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMGV  120
KMNPSALKKP HQVNLSSMLQ NSTPSSPFTS LSFKNNHNNS YYYQPHLPFT GSESMTYSSL  180
LSDNYSTFES LQNYQVNNSG FMLGCETSCS SSSDGSCNNN QINHVKEAEL GFIGDGTFCD  240
QIIGGGFSYL NSGVELEDTQ KLVPSNAGKV NSGVTDEESR LWGESPLEYG LEEIKQLIST  300
SSCNNFMLDD SKTGEMAMYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G054700.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312650.0KT031265.1 Glycine max clone HN_CCL_53 MYB/HD-like transcription factor (Glyma13g20510.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535147.10.0transcription factor RAX2
RefseqXP_028182886.10.0transcription factor RAX2-like
TrEMBLA0A445IIZ00.0A0A445IIZ0_GLYSO; Transcription factor MYB36
TrEMBLI1L8X40.0I1L8X4_SOYBN; Uncharacterized protein
STRINGGLYMA10G06190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-76myb domain protein 36