PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G053500.1.p
Common NameGLYMA_10G053500, LOC100796522
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 701aa    MW: 77266.4 Da    PI: 7.5109
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G053500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.4e-23118219199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF 
  Glyma.10G053500.1.p 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVDPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL 205
                          89****************************996445555..69999******************************************** PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Glyma.10G053500.1.p 206 --RAENGDLCVGIRRA 219
                          ..4488999****997 PP
2Auxin_resp109.43.8e-36287370183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++ a++k++FevvY+Prast+eF+vk++ ve+al+++++ G Rfkmafetedss++++ +Gt+++ + +dp++WpnS+Wr+L+
  Glyma.10G053500.1.p 287 ASNLAANKKPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSAQVADPLNWPNSPWRLLQ 370
                          67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-36111221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-29112219IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-21117218No hitNo description
PROSITE profilePS5086312.872118220IPR003340B3 DNA binding domain
SMARTSM010196.9E-21118220IPR003340B3 DNA binding domain
PfamPF023624.1E-21118219IPR003340B3 DNA binding domain
PfamPF065071.0E-31287370IPR010525Auxin response factor
PROSITE profilePS5174517.57614694IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MITFMDTKEK SKEVESCLDP QLWHACAGGI VQMPAVNSKV YYFPQGHAEH ACGPVNFRTC  60
PKVPPFVPCR VTAVKYRADP ETDEVYAKLK LIPLNANDVD YDRDVVGGAE TQDKPASFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VDPPVQNILA KDVHGETWKF RHIYRGTPRR  180
HLLTTGWSTF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGICGGLETS SGWNPAGGNC  240
HIPYGGFSPF FREDDNRISR NGNSNGLNPS VSMMGKGKVR PEAVSEASNL AANKKPFEVV  300
YYPRASTPEF CVKASLVEAA LQIRWCSGIR FKMAFETEDS SRISWFMGTI SSAQVADPLN  360
WPNSPWRLLQ VTWDEPDLLQ NVRRVSPWLV ELVSNMPAIH FSPFSPPRKK LRLPQQPDFP  420
LDGQIPLSTF PSNLLGPSNT NQFGCLLEST PAGMQGARHA HYGLSLSDLH LSKLQSGLFS  480
TGFPSLDHAA TPMRVSNSIT LQKPNLSENV SCLLTMANST QSSKKLDVGK TPSLVLFGQK  540
ILTEQQISPS SSGDTLSPVL TRNCSSDGNV DKVTNFSDGS GSALHQEGLR EHSSCERFQW  600
CKDNHQETEA GLEIGHCKVF MESEDVGRTM DLSLLRSYDE LHRKLADMFG IEKSEMLSHV  660
LYRDSTGAVK RISDESFSDF TRTAKRLTIL MDSGSNNVGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-77839141388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.447570.0hypocotyl| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G053500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537296.10.0auxin response factor 18 isoform X1
RefseqXP_006588784.10.0auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLK7LHL40.0K7LHL4_SOYBN; Auxin response factor
STRINGGLYMA10G06080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]