PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G045300.1.p
Common NameGLYMA_10G045300, LOC100796348
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 182aa    MW: 20078.9 Da    PI: 9.4393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G045300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144466123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F++   L  H  +H
  Glyma.10G045300.1.p 44 FECKTCNRKFNSFQALGGHRASH 66
                         89**********99999998887 PP
2zf-C2H211.10.001299121123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cg+ Fs    L  H+r+H
  Glyma.10G045300.1.p  99 HNCFICGQGFSLGQALGGHMRRH 121
                          67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-114368IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-84366No hitNo description
SMARTSM003550.24466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-894121No hitNo description
PROSITE profilePS501579.22499126IPR007087Zinc finger, C2H2
SMARTSM003551.299121IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-799123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAMKRHRENE GTTLESWGMQ NCSISITPDT TSVSSSTTSP EEVFECKTCN RKFNSFQALG  60
GHRASHNKRV EMEGEEQQLK LKNKGKIYGL GKQSEPKIHN CFICGQGFSL GQALGGHMRR  120
HRDATNDVFS SINQVVAKVS VLKRSCNGKV FCLDLNLSPL ENDLKLLLFG KVSPKVNPSS  180
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G045300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536961.11e-133zinc finger protein ZAT11
TrEMBLA0A0R0HPB81e-132A0A0R0HPB8_SOYBN; Uncharacterized protein
STRINGGLYMA10G05190.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-34C2H2 family protein