PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G036200.1.p
Common NameGLYMA_10G036200, LOC100781487
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 138aa    MW: 15545.3 Da    PI: 5.0724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G036200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-201567156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         ++y+GVr+++ +g+++AeIrdp     + +r++lg+f taeeAa+a+++a+ +++g+
  Glyma.10G036200.1.p 15 PRYRGVRRRP-WGKFAAEIRDPAR---HgARVWLGTFLTAEEAARAYDRAAYEMRGA 67
                         68********.**********943...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-141566IPR001471AP2/ERF domain
CDDcd000182.10E-191575No hitNo description
SMARTSM003809.0E-351680IPR001471AP2/ERF domain
PROSITE profilePS5103224.6451674IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-231675IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-311676IPR001471AP2/ERF domain
PRINTSPR003673.6E-111728IPR001471AP2/ERF domain
PRINTSPR003673.6E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEEESKEKRD TKGEPRYRGV RRRPWGKFAA EIRDPARHGA RVWLGTFLTA EEAARAYDRA  60
AYEMRGALAV LNFPNEYPSC SSMSSSSTLA PSSSSSNSML KNDHGKQVIE FECLDDKLLE  120
DLLDCDDYAY EKDLPKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-341611814114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G036200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536938.13e-98ethylene-responsive transcription factor ERF096
RefseqXP_028182620.13e-98ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445IHH26e-97A0A445IHH2_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLI1L8D26e-97I1L8D2_SOYBN; Uncharacterized protein
STRINGGLYMA10G04160.11e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2236524
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]