PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G031600.1.p
Common NameGLYMA_10G031600, LOC100793177
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 284aa    MW: 30560.6 Da    PI: 6.4052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G031600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-10133177554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Glyma.10G031600.1.p 133 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 177
                          99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15126187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15130187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7133177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MANHPSEAPT DDFLEQILGL STFASADPAA DASPMMLQLN SGDAATHLAA THLAAFHAPP  60
YQLGLSLDQG KGPFLTPEDA SGSGKRFRDD VVDTRPKNFF HGQPMPTTVP TAPHPPAVRP  120
RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPSVNK TDRAAMLDEI VDYVKFLRLQ  180
VKVLSMSRLG GAGAVAPLVT DIPLSSVEEE GGEGRNQPAW EKWSNDGTER QVAKLMEENV  240
GAAMQFLQSK ALCIMPVSLA SAIYQSQPSG TSSIVKPETN PPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.87910.0pod| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G031600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536810.10.0transcription factor UNE12
SwissprotO227681e-128UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0R0HNQ20.0A0A0R0HNQ2_SOYBN; Uncharacterized protein
STRINGGLYMA10G03690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]