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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G029700.1.p | ||||||||
Common Name | GLYMA_10G029700, LOC100812496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 464aa MW: 51750.2 Da PI: 9.6413 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Glyma.10G029700.1.p 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00052 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Glyma.10G029700.1.p 149 WKCEKCSKIYAVQSDWKAHSKTC 171 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 72 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.26E-6 | 72 | 95 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 73 | 95 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.3E-5 | 73 | 95 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 114 | 144 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 137 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.26E-6 | 144 | 169 | No hit | No description |
SMART | SM00355 | 170 | 149 | 169 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MFPAVMSNSN SWSEEATVSC GTRITGLNHV VTTTISPQQP QKIKKKRNLP GNPDPDAEVI 60 ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKDVK KKAYVCPEPS 120 CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATNTTTNP LVHSLFLLPT QQRNNNNNIN 240 FINPWDPNPN PSNLTTLHNN NIKPESHNFH IPNTSTNNNN NISSSLLHHH QQPNKRIITS 300 PYRDLHVRTQ PHSNAATSAH LSATALLQKA ATVGAAAITG PTLMTQLSMA ELGAVTTQLD 360 SVPMTVPLPP DQRYMNMRGL KNNNNDGLTR DFLGLTNGSA VDVSIDVKDM LTFTAGSIEY 420 NHRHQQQQSY EHHHSHNNLL FKPQQGFGFL GTTTGPESWG NCE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-36 | 145 | 209 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 5e-36 | 145 | 209 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19174 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G029700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-180 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536915.1 | 0.0 | protein indeterminate-domain 12 | ||||
Swissprot | O22759 | 1e-119 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | K7LH38 | 0.0 | K7LH38_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G03541.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-110 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G029700.1.p |
Entrez Gene | 100812496 |
Publications ? help Back to Top | |||
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