PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G021400.1.p
Common NameGLYMA_10G021400, LOC100798117
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 349aa    MW: 38834.2 Da    PI: 6.6887
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G021400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-061154239
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                         ++r+C+ +++  + l+C  ++  lC  C  + H +       Ht+
  Glyma.10G021400.1.p 11 KQRTCDYCGDFTALLYCSADSAKLCFFCDRKVH-SpnqlfskHTR 54
                         789*******99*********************.43667777775 PP
2zf-B_box17.31e-055599342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                         ++ C+ +++ +++  C   ++ lC++C  e+Hk      H+++pl
  Glyma.10G021400.1.p 55 AQLCDSCGDSPASVLCSAENSVLCHNCDCEKHKHlasevHQRKPL 99
                         689*****************************8788899988875 PP
3CCT64.23.9e-22302345144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ allRY+eK+ktR+++K+irYesRK++AesR R+KGrFvk +
  Glyma.10G021400.1.p 302 RDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDE 345
                          899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8831057IPR000315B-box-type zinc finger
SMARTSM003366.9E-121057IPR000315B-box-type zinc finger
PfamPF006431.6E-51154IPR000315B-box-type zinc finger
CDDcd000211.10E-51357No hitNo description
PROSITE profilePS5011910.5525399IPR000315B-box-type zinc finger
CDDcd000213.60E-65799No hitNo description
SMARTSM003360.585899IPR000315B-box-type zinc finger
PROSITE profilePS5101714.991302344IPR010402CCT domain
PfamPF062031.1E-16302344IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMSGSPSPNS KQRTCDYCGD FTALLYCSAD SAKLCFFCDR KVHSPNQLFS KHTRAQLCDS  60
CGDSPASVLC SAENSVLCHN CDCEKHKHLA SEVHQRKPLE GFSGCPSVTE LLTILGLSEK  120
SLLSNEGTSQ IDYDLSDLHV WSAPSVNGLE YLITSTASSH KNRKSAFGRH KEEILSQLRE  180
LIKLEPDLIH GEVDAERQGQ FGNLPTGFER DVEASMFPSY EAGVFCWHGE SSDPTNQIVP  240
SDTSSLRDFG EVVSAEDGSF TIPGTGTQAN FNNEGKPSNS FNSENLSPTP KATPYELTSH  300
ERDSALLRYR EKKKTRRYDK HIRYESRKVR AESRMRIKGR FVKDETQK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.193945e-42leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G021400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588604.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLK7LGY40.0K7LGY4_SOYBN; Uncharacterized protein
STRINGGLYMA10G02621.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Representative plantOGRP7906812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-70B-box type zinc finger protein with CCT domain