PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G020100.1.p
Common NameGLYMA_10G020100, LOC100796514
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 146aa    MW: 16249.2 Da    PI: 5.9865
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G020100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.42.1e-5333128297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdr+lPianv+rimk++lP nakisk+aket+qe vsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy eplk yl kyr
  Glyma.10G020100.1.p  33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLYKYR 122
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+ege+
  Glyma.10G020100.1.p 123 EMEGER 128
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5129136IPR009072Histone-fold
SuperFamilySSF471136.45E-4035140IPR009072Histone-fold
PfamPF008087.1E-2738102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.2E-196684No hitNo description
PRINTSPR006153.2E-1985103No hitNo description
PRINTSPR006153.2E-19104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGDNIGKVLD REGFKYNFTA SASGTSAQDG VIKEQDRLLP IANVGRIMKQ ILPPNAKISK  60
EAKETMQESV SEFISFVTGE ASDKCHKEKR KTVNGDDICW ALATLGFDDY SEPLKRYLYK  120
YREMEGERAN QNKGSNGYEN NIANI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4332123192Transcription factor HapC (Eurofung)
4g92_B2e-4332123192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.4030.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G020100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-115AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536891.11e-105nuclear transcription factor Y subunit B-5
RefseqXP_028183993.11e-105nuclear transcription factor Y subunit B-5-like
SwissprotO822486e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLI1L7X01e-104I1L7X0_SOYBN; Uncharacterized protein
STRINGGLYMA10G02480.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]