PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 237aa MW: 27283.1 Da PI: 9.6674

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G010300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W eEd +lv++++ +G g+W+++ar+ g++R++k+c++rw++yl Glyma.10G010300.1.p 28 KGPWAVEEDTILVNYIATHGEGHWNSVARCAGLRRSGKSCRLRWLNYL 75 79********************************************97 PP
2	Myb_DNA-binding	47.6	3.7e-15	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+ l++d++ ++G++ W++Ia+ ++ gRt++++k++w++ Glyma.10G010300.1.p 81 RGNITLQEQILILDLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 124 7899****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.917	23	75	IPR017930	Myb domain
SuperFamily	SSF46689	8.39E-30	24	122	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-14	27	77	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-15	28	75	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-21	29	82	IPR009057	Homeodomain-like
CDD	cd00167	4.45E-10	30	75	No hit	No description
PROSITE profile	PS51294	22.393	76	130	IPR017930	Myb domain
SMART	SM00717	8.4E-13	80	128	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-13	81	124	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-21	83	128	IPR009057	Homeodomain-like
CDD	cd00167	3.63E-9	85	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDVKKGGSVV QAQVKLQKHN EKEMGMRKGP WAVEEDTILV NYIATHGEGH WNSVARCAGL 60 RRSGKSCRLR WLNYLRPDVR RGNITLQEQI LILDLHSRWG NRWSKIAQQL PGRTDNEIKN 120 YWRTRVIKQA KQLKCDVNSK QFRDTLRYVW MPRLLERLQP TSQALEPNQS GLVLHASSSL 180 LPSNSDHSIE RGSDLWPGFN NQMLLEQGSG GDLLESLWDD DNMCFLQQLS YDLQMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-23	3	122	4	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.24862	0.0	cotyledon\| flower\| root\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269\|PubMed:22301384}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G010300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	4e-54	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536859.1	1e-175	transcription factor MYB78
Swissprot	Q10MB4	9e-79	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	I1L7M3	1e-174	I1L7M3_SOYBN; Uncharacterized protein
STRING	GLYMA10G01330.1	1e-175	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-77	myb domain protein 78

Link Out ? help Back to Top
Phytozome	Glyma.10G010300.1.p
Entrez Gene	778065

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]