PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G004000.1.p
Common NameGLYMA_10G004000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 176aa    MW: 19473.8 Da    PI: 4.8785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G004000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000452343323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C  C+++F++   L +H  +H
  Glyma.10G004000.1.p 23 CRLCNQVFTDTQALLTHVESH 43
                         99***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3282148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MANNFYNNAQ FAGFYNNTDP KGCRLCNQVF TDTQALLTHV ESHMAQEEDS LRRLNSSPPN  60
VNSQMQLGSQ QFPPQPAMGD GRNFQAQSQP MRMPQPISKN PIFNSSQIGS SSTPIRQMQV  120
SPQAFPFSGS INGDGSKPYI SKLEKPIKKI DFIDLVNMDG DDNLEVEAMD LDLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G004000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358711e-144AC235871.2 Glycine max clone GM_WBb0132A17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145903.11e-53hypothetical protein PHAVU_007G277300g
TrEMBLK7LGQ41e-125K7LGQ4_SOYBN; Uncharacterized protein
STRINGGLYMA10G00655.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1527958