PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G001400.1.p
Common NameGLYMA_10G001400, LOC100810717
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 680aa    MW: 77723.4 Da    PI: 7.9542
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G001400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.5e-2162155190
                 FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 
                          +fY+e+Ak+ GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++     +w+vt + ++Hn
  Glyma.10G001400.1.p  62 EFYSEFAKRSGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHN 151
                          6**************9998877356667999*************99999999*******************9988888************ PP

                 FAR1  87 Hela 90 
                          Hel 
  Glyma.10G001400.1.p 152 HELL 155
                          **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-1862155IPR004330FAR1 DNA binding domain
PfamPF105512.0E-19278369IPR018289MULE transposase domain
PROSITE profilePS509669.186553589IPR007527Zinc finger, SWIM-type
PfamPF044345.6E-6560587IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MSEEAGSMLV VYDDPSDQRS LSLDDASSTE ESPDETRLSL ETTNDAIPYI GQRFATHDAA  60
YEFYSEFAKR SGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTE SKPQRNRKSS  120
RCGCQAYMRI SKTTEFGAPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DADKNRILMF  180
AKTGISVHQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESLD LLRMCRNIKE  240
KDPNFKFEYT LDANNRLENI AWSYASSTQL YDIFGDAVVF DTSHRLTAFD MPLGIWVGIN  300
NYGMPCFFGC TLLRDETVRS FSWALKAFLG FMNGKAPQTI LTDQNICLKE ALSTEMPTTK  360
HAFCIWMIVA KFPSWFNAVL GERYNDWKAE FYRLYNLESV EDFELGWREM ACSFGLHSNR  420
HMVNLYSSRS LWALPFLRSH FLAGMTTTGQ SKSINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQTGEQQT MQQNLQNVCL KTGAPMESHA ATILTPFAFS KLQEQLVLAA HYASFSIEDG  540
FLVRHHTKAE GGRKVYWAPQ EGIISCSCHQ FEFTGILCRH SLRVLSTGNC FQIPDRYLPI  600
RWRRINMPSS KLLQSAPNDH AERVKLLQNM VSSLMTESAK SKERLDIATE QVTLLLSRIR  660
EQPISLQVGR DISSINRNL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217910.0cotyledon| flower| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G001400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588528.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_028184456.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0B2PLU40.0A0A0B2PLU4_GLYSO; Protein FAR1-RELATED SEQUENCE 11
TrEMBLI1L7C40.0I1L7C4_SOYBN; Uncharacterized protein
STRINGGLYMA10G00380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]