PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G280200.3.p
Common NameGLYMA_09G280200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 494aa    MW: 55155.1 Da    PI: 8.1256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G280200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31154211260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dg+nW KYGqK+vkgse+prsYY+Ct+++C+vkkkve+s  d++++ei+Y+g+H h+k
  Glyma.09G280200.3.p 154 EDGFNWIKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSL-DGHITEIVYKGQHSHPK 211
                          7****************************************.***************85 PP
2WRKY100.31.2e-31322380159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK+vkg+ ++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Glyma.09G280200.3.p 322 LDDGFRWRKYGQKVVKGNSNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHD 380
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26143212IPR003657WRKY domain
PROSITE profilePS5081121.39148212IPR003657WRKY domain
SuperFamilySSF1182901.57E-23149212IPR003657WRKY domain
SMARTSM007741.2E-33153211IPR003657WRKY domain
PfamPF031062.6E-23154210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-35307382IPR003657WRKY domain
SuperFamilySSF1182903.53E-27315382IPR003657WRKY domain
PROSITE profilePS5081135.335317382IPR003657WRKY domain
SMARTSM007741.1E-35322381IPR003657WRKY domain
PfamPF031068.1E-24323380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MFARRPSLSI SPSEFLNSPL FFPSPNIFAS PTTEALVGQS FNWRNGSGEE QQRGKEDEKN  60
YSDFSFQTQI QSSSNMFQVE PLKKQDMWKF NEPTKQTDFS PERTATKSEF PSIQSFSSEM  120
AEGKPEIQSS SVPGSGYFDY TSASQSVREQ KRTEDGFNWI KYGQKQVKGS ENPRSYYKCT  180
HPNCSVKKKV EKSLDGHITE IVYKGQHSHP KPQSTRRTNS QSIHQPSSSC TNSGITDHSV  240
VTLGNPQMDH FSIQEDSSAS VGEEEFEQTP QTSYSGGDGD NLGPDAKRWK GDNENDGYSV  300
SASRSVREPR VVVETTSEID ILDDGFRWRK YGQKVVKGNS NARSYYKCTA PGCSVRKHVE  360
RAAHDIKAVI TTYEGKHNHD VPAARGSGKY NSNRNSQNSN ISAPIRPSAV NCYSNSSSFT  420
NSLYNNTRLP ATGNQESFSL DKFKNPGSFG YSDLNRPMGS HTNHAQYTDA AYSRAKDERK  480
DDSFLQSFLS KDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36141383578Probable WRKY transcription factor 4
2lex_A2e-36141383578Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.297190.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G280200.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534668.20.0probable WRKY transcription factor 33
SwissprotQ6IEQ71e-110WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0R0IL430.0A0A0R0IL43_SOYBN; Uncharacterized protein
STRINGGLYMA09G41670.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-92WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]