PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G260100.1.p
Common NameGLYMA_09G260100, LOC100812659
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BES1
Protein Properties Length: 706aa    MW: 78842.5 Da    PI: 4.9678
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G260100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822146.52.3e-45802201134
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssa 86 
                          gg++r+++ +E+E++k+RERrRRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DG t++   +g+kp   ++ ++ ss+
  Glyma.09G260100.1.p  80 GGTRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGSTFPsrsQGQKPAgGNSTIVTSSS 169
                          5899*****************************************************************988899999975555555555 PP

               DUF822  87 s..aspesslq.sslkssalaspvesysaspksssfpspssldsislasaa 134
                          s  as+++++  ++ ++s  +sp+e  ++++k + +p ps +d  s++ ++
  Glyma.09G260100.1.p 170 SlaASQQTPSAsLRGVASGYRSPLEYNACQTKGVFMPTPSPYDLSSSSRSQ 220
                          55578888777688999**************************98776543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.9E-4081220IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.87E-176263701IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.807.3E-192264699IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.3E-99270691IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63301315IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63322340IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63344365IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.2E-6427436IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.0E-63437459IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63510529IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63544560IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63561572IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63579602IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-63620642IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.2E-6671685IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008426.2E-6686700IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MATDMQRLVG TSEDDEEMGM DVKDEDDEDD DYEENGGEQG NASVSGMVEI DDGNGIGTAT  60
GDNRFQQHQQ FQEQVGTPGG GTRRSRPLEE KERTKLRERR RRAITARILA GLRRHGNYNL  120
RVRADINDVI AALAREAGWV VLPDGSTFPS RSQGQKPAGG NSTIVTSSSS LAASQQTPSA  180
SLRGVASGYR SPLEYNACQT KGVFMPTPSP YDLSSSSRSQ TSMVGDGEAQ RDNRPLIAGS  240
MDNADDKQIA DLPPRLPERD LAGTPYVPVY VMLSLGVINI KCELVDPDGL LKQLRVLKSV  300
HVDGVMVDCW WGIVEAHAPQ EYNWNGYKRL FQMVRELKLK LQVVISFHEC GGNFGDDVCI  360
PLPHWVAEIG RSNPDIFFTD KEGRHNPECL SWGIDKERVL RGRTAVEVYF DFMRSFRVEF  420
DEYFEDGFIS MIEIGLGPCG ELRYPSCPVK HGWRYPGVGE FQCYDQYMLK SLRKAAEVRG  480
HSIWARGPDN AGTYNSQPHE TGFFCDGGDY DGFYGRFFLS WYSQVLVDHG NRVLSLAKLA  540
FEGSCIAAKL SGIYWWYKTA SHAAELTAGY YNPCNRDGYA AIMTMLKTIG VSLNIPCVDL  600
HTFNQQHEGF PETFADPEGI VWQLLNAGWD VDLPVTGQNG FPCLNRVGYN KVLDNAKPMN  660
DPDGRLFSSF TYLRLSPLLM EQQNFVEFER FVKRMHGEAV LDLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v3i_A1e-14326669811444Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.289060.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G260100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534564.10.0beta-amylase 7
RefseqXP_014617900.10.0beta-amylase 7
RefseqXP_028247857.10.0beta-amylase 7-like
RefseqXP_028247858.10.0beta-amylase 7-like
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLK7LG540.0K7LG54_SOYBN; Beta-amylase
STRINGGLYMA09G39603.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Representative plantOGRP4345912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]