PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G248200.1.p
Common NameGLYMA_09G248200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 708aa    MW: 77344.1 Da    PI: 6.8158
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G248200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.7e-15265324155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.09G248200.1.p 265 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 324
                          57*******************666664478446*************************98 PP
2AP246.31.1e-14367418155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.09G248200.1.p 367 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 418
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-22265334No hitNo description
SuperFamilySSF541713.73E-17265334IPR016177DNA-binding domain
PfamPF008471.3E-11265324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15266333IPR001471AP2/ERF domain
SMARTSM003804.8E-29266338IPR001471AP2/ERF domain
PROSITE profilePS5103219.164266332IPR001471AP2/ERF domain
PRINTSPR003672.9E-6267278IPR001471AP2/ERF domain
CDDcd000184.44E-25367428No hitNo description
SuperFamilySSF541719.15E-18367428IPR016177DNA-binding domain
PfamPF008473.7E-10367418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18368427IPR001471AP2/ERF domain
SMARTSM003807.0E-34368432IPR001471AP2/ERF domain
PROSITE profilePS5103219.058368426IPR001471AP2/ERF domain
PRINTSPR003672.9E-6408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MGSMNLLGFS LSPHEEHPSS QDHSQTTPSR FSFNPDGSIS STDVAGGCFD LTSDSTPHLL  60
NLPSYGIYEA FHRNNSINTT QDWKENYNSQ NLLLGTSCNK QNMNQNQQQQ PKLENFLGGH  120
SFGEHEQTYG GNSASTDYMF PAQPVSAGGG GSGGGSNNNN NSNSIGLSMI KTWLRNQPPN  180
SENINNNNES GGNIRSSVQQ TLSLSMSTGS QSSTSLPLLT ASVDNGESSS DNKQPNTSAA  240
LDSTQTGAIE TAPRKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQV  300
YLGGYDKEEK AARAYDLAAL KYWGTTTTTN FPISHYEKEL EEMKHMTRQE YVASLRRKSS  360
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD VAAIKFRGLS  420
AVTNFDMSRY DVKSILESTT LPIGGAAKRL KDMEQVELSV DNGHRADQVD HSIIMSSHLT  480
QGINNNYAGG GTATHHNWHN AHAFHQPQPC TTMHYPYGQR INWCKQEQQD NSDAPHSLSY  540
SDIHQLQLGN NGTHNFFHTN SGLHPMLSMD SASIDNSSSS NSVVYDGYGG GGGYNVMPMG  600
TTTAVVASDG DQNPRSNHGF GDNEIKALGY ESVYGSATDS YHAHARNLYY LTQQQSSSVD  660
TVKASAYDQG SACNTWVPTA IPTHAPRSTT SMALCHGATT PFSLLHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278260.0somatic embryo| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G248200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758560.0HM775856.1 Glycine max babyboom 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028179766.10.0AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A445J5Q90.0A0A445J5Q9_GLYSO; AP2-like ethylene-responsive transcription factor BBM2 isoform A
TrEMBLK7LFX70.0K7LFX7_SOYBN; Uncharacterized protein
STRINGGLYMA09G38370.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-134AP2 family protein