PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 239aa MW: 26822.7 Da PI: 7.4411

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G244000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.8	6e-25	154	222	1	59
---SS-EEEEEEE--TT-SS-..........EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp..........rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +p rsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+ Glyma.09G244000.1.p 154 LDDGYKWRKYGQKVVKNSLHPsgrshllgycRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHS 222 59**************87766666666669**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.7E-32	139	222	IPR003657	WRKY domain
SuperFamily	SSF118290	9.02E-25	146	222	IPR003657	WRKY domain
PROSITE profile	PS50811	24.88	149	221	IPR003657	WRKY domain
SMART	SM00774	8.5E-32	154	223	IPR003657	WRKY domain
Pfam	PF03106	1.1E-18	155	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MEGERGGAPN YELQVSFTNT PQAIHELGFV QYEENQVLGF LSPSSQSQSS PLSQSLKSDT 60 LVVATATTAI AAAATIGFVS HSELAIKTWN NDQEVGTLDP KPVEEENCTG NGSDQGNNNA 120 WWRSAATEKN KLKIRRKLRE PRFCFQTRSD VDVLDDGYKW RKYGQKVVKN SLHPSGRSHL 180 LGYCRSYYRC THNNCRVKKR VERLSEDCRM VITTYEGRHN HSPCDDSNSS ENECFTSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-23	145	221	8	74	Probable WRKY transcription factor 4
2lex_A	5e-23	145	221	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	KIRRKLR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.26133	0.0	hypocotyl\| meristem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G244000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091680	0.0	BT091680.1 Soybean clone JCVI-FLGm-8F17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014635041.1	0.0	uncharacterized protein LOC100526878 isoform X1
Refseq	XP_014635042.1	0.0	uncharacterized protein LOC100526878 isoform X1
Refseq	XP_028180216.1	0.0	probable WRKY transcription factor 12 isoform X1
Refseq	XP_028180217.1	0.0	probable WRKY transcription factor 12 isoform X1
Swissprot	Q93WY4	7e-67	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A445J5J9	1e-180	A0A445J5J9_GLYSO; Putative WRKY transcription factor 12 isoform A
TrEMBL	K7LFU7	1e-180	K7LFU7_SOYBN; Uncharacterized protein
STRING	GLYMA09G37930.2	1e-180	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7294	32	45
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	9e-68	WRKY family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G244000.1.p
Entrez Gene	100526878

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]