PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G242600.1.p
Common NameGLYMA_09G242600, LOC100806588
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 204aa    MW: 22835.7 Da    PI: 8.2382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G242600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-2077127255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp++ng  +r++lg+++t+e+Aa a+++a+ k++g
  Glyma.09G242600.1.p  77 HYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDTEEKAALAYDKAAFKMRG 127
                          8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-3376136IPR001471AP2/ERF domain
CDDcd000181.02E-3176137No hitNo description
PfamPF008473.7E-1577127IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2477136IPR016177DNA-binding domain
SMARTSM003801.8E-3977141IPR001471AP2/ERF domain
PROSITE profilePS5103224.73777135IPR001471AP2/ERF domain
PRINTSPR003671.6E-137889IPR001471AP2/ERF domain
PRINTSPR003671.6E-13117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASATVDSDF EFLESVQQYL LGHDSVNLMP ETQQTASHDP FSDPKCDGDL ENIIVFRSED  60
ATAVVARDVH APPTWKHYRG VRRRPWGKFA AEIRDPKKNG ARVWLGTYDT EEKAALAYDK  120
AAFKMRGRKA KLNFPHLIDS DMLSEEVMVT TSKRSLAENS PPSSPSWSCS DDSLESQGAK  180
RRKSLADLLN KLAKNRSHVK VER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-3176140468ATERF1
3gcc_A3e-3176140468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.364120.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G242600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3572111e-177AF357211.1 Glycine max ethylene-responsive element binding protein 1 (EREBP1) mRNA, complete cds.
GenBankBT0913281e-177BT091328.1 Soybean clone JCVI-FLGm-7P19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534472.11e-151ethylene-responsive transcription factor 1
SwissprotQ404792e-35ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLI1L6251e-149I1L625_SOYBN; Uncharacterized protein
STRINGGLYMA09G37780.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]