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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.09G235100.1.p |
| Common Name | GLYMA_09G235100, LOC100780023 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MYB |
| Protein Properties |
Length: 238aa MW: 26936.3 Da PI: 7.9052 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G235100.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.1 | 7.6e-17 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++ Ed+ll+ +v+++G g+W++++++ g++R++k+c++rw++yl
Glyma.09G235100.1.p 9 KGTWSQIEDDLLKACVQLYGEGNWHLVPKRAGLNRCRKSCRLRWLNYL 56
799*******************************************97 PP
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| 2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 62 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg ++++E + ++++k+lG++ W++Ia +++ gRt +++k++w++y
Glyma.09G235100.1.p 62 RGDFSEDEIDMMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTY 106
899*******************.*********.************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MEGSSGVRKG TWSQIEDDLL KACVQLYGEG NWHLVPKRAG LNRCRKSCRL RWLNYLKPNI 60
KRGDFSEDEI DMMIRLHKLL GNRWSLIAGR LPGRTSNDVK NYWNTYARRK LHSHKKDNNI 120
EKQARAKTTV KPHEVIKPVP RALTKTSPRL QGKFINSSEV GVSHEEGATS ISGSGNWWET 180
FLDDKEDIEE GNNNKCFFGG EDGALDLWGE ELNSIACDFL TQGETWSDFL LDLGLGD*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
| Function -- GeneRIF ? help
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- Data suggests that loss of function for one particular seed coat-expressed R2R3 MYB gene is responsible for the brown seed coat/hilum phenotype in soybean. [MYB]
[PMID: 22070454]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB934280 | 0.0 | AB934280.1 Glycine max gene for MYB transcription factor, complete cds, allele: R, cultivar: Clark. |
| GenBank | AB934281 | 0.0 | AB934281.1 Glycine max gene for MYB transcription factor, complete cds, allele: r-m. |
| Publications
? help Back to Top |
- Gillman JD,Tetlow A,Lee JD,Shannon JG,Bilyeu K
Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats.
BMC Plant Biol., 2011. 11: p. 155
[PMID:22070454] - Li T, et al.
Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
[PMID:25450360] - Yan F,Di S,Takahashi R
CACTA-superfamily transposable element is inserted in MYB transcription factor gene of soybean line producing variegated seeds.
Genome, 2015. 58(8): p. 365-74
[PMID:26360633] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275]
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