PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G230200.1.p
Common NameGLYMA_09G230200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 307aa    MW: 34152.7 Da    PI: 9.8847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G230200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039829223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C++C+k+Fs+   +  H+r+H
  Glyma.09G230200.1.p  8 VCKICSKCFSSGKAMGGHMRSH 29
                         6*******************99 PP
2zf-C2H211.20.0011185207123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk+F +   L  H  +H
  Glyma.09G230200.1.p 185 FQCKRCGKTFQSYQALGGHKANH 207
                          89********9988888887776 PP
3zf-C2H217.31.3e-05237259123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C+k+F++   L  H ++H
  Glyma.09G230200.1.p 237 FECPYCSKVFKSARALGGHKKVH 259
                          89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.972734IPR007087Zinc finger, C2H2
SMARTSM003550.32729IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PfamPF139121.5E-7929IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.97185212IPR007087Zinc finger, C2H2
SMARTSM003550.089185207IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.41E-10185259No hitNo description
PfamPF139121.3E-11185209IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-4233259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-8236259IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887237264IPR007087Zinc finger, C2H2
SMARTSM003550.0019237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEKNNSKVCK ICSKCFSSGK AMGGHMRSHF AKLPIPPKPK TKNQALDNST ELTHLPTQSA  60
SPLTSYPQKQ PSQNFRSLKH NVFAFLANSN RENESRSYPK NPTRKRSKCH RRFIPAAEMN  120
AEAEPKQVSS KLDSLIAEEA AWTLLMLSRD KWPESKETKK QKMKGKDGEN GCNDLLVQTQ  180
SRAKFQCKRC GKTFQSYQAL GGHKANHKKN ESICQEGGDS NDDGSDKNSV IVDEKVFECP  240
YCSKVFKSAR ALGGHKKVHF SKTIIANAQT TANEFGGRLV VDLNFPAPRE DEEVSHIEFL  300
AAFGEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G230200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214422.11e-131zinc finger protein ZAT9
TrEMBLA0A445J4Y50.0A0A445J4Y5_GLYSO; Zinc finger protein ZAT9
STRINGGLYMA09G36450.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1538968
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-42C2H2-like zinc finger protein