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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.09G230200.1.p |
| Common Name | GLYMA_09G230200 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 307aa MW: 34152.7 Da PI: 9.8847 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G230200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.7 | 0.00039 | 8 | 29 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C++C+k+Fs+ + H+r+H
Glyma.09G230200.1.p 8 VCKICSKCFSSGKAMGGHMRSH 29
6*******************99 PP
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| 2 | zf-C2H2 | 11.2 | 0.0011 | 185 | 207 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cgk+F + L H +H
Glyma.09G230200.1.p 185 FQCKRCGKTFQSYQALGGHKANH 207
89********9988888887776 PP
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| 3 | zf-C2H2 | 17.3 | 1.3e-05 | 237 | 259 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+C+k+F++ L H ++H
Glyma.09G230200.1.p 237 FECPYCSKVFKSARALGGHKKVH 259
89**************9999998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50157 | 9.972 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.32 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.5E-7 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.97 | 185 | 212 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.089 | 185 | 207 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 3.41E-10 | 185 | 259 | No hit | No description |
| Pfam | PF13912 | 1.3E-11 | 185 | 209 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 187 | 207 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 5.1E-4 | 233 | 259 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| Pfam | PF13912 | 1.6E-8 | 236 | 259 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.887 | 237 | 264 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0019 | 237 | 259 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MEKNNSKVCK ICSKCFSSGK AMGGHMRSHF AKLPIPPKPK TKNQALDNST ELTHLPTQSA 60
SPLTSYPQKQ PSQNFRSLKH NVFAFLANSN RENESRSYPK NPTRKRSKCH RRFIPAAEMN 120
AEAEPKQVSS KLDSLIAEEA AWTLLMLSRD KWPESKETKK QKMKGKDGEN GCNDLLVQTQ 180
SRAKFQCKRC GKTFQSYQAL GGHKANHKKN ESICQEGGDS NDDGSDKNSV IVDEKVFECP 240
YCSKVFKSAR ALGGHKKVHF SKTIIANAQT TANEFGGRLV VDLNFPAPRE DEEVSHIEFL 300
AAFGEV*
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