PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G223500.1.p
Common NameGLYMA_09G223500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 877aa    MW: 95779.1 Da    PI: 5.3279
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G223500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-15466504341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnCkks+Clk+YC Cfaag++C++ C C++C N+ e
  Glyma.09G223500.1.p 466 CKHCNCKKSRCLKLYCHCFAAGTYCTDPCACQGCLNRPE 504
                          89**********************************876 PP
2TCR48.91.3e-15551589139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCk+s ClkkYCeC++a++ Cs+ C+Ce+CkN 
  Glyma.09G223500.1.p 551 RHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNV 589
                          589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-15464505IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.296465591IPR005172CRC domain
PfamPF036382.1E-11467502IPR005172CRC domain
SMARTSM011143.2E-17551592IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-11553588IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MMDSPGPSKN NNGSSSSAST LNNNNNDAAS SESPQVQESP FLRFVKTLSP IPTKASHTTQ  60
GCLRLSSPPL VFKSPRISHR ETQLTERPQG TRSLGGVILQ SVNEGNMLGE APGDSRTSNS  120
QQSLPERFIN DTQQVFDSKN DENTQYYSSP SCIDKYLVDP GDIDQMYSAG QDVEQQSTDP  180
AEASLSDQIH PKNNILNFDR QDGPGDKVEE SLPLSEGFNK FHQENAAYGE EPEEMEVENN  240
DVQWSSQEPA KLESILAADV FEKRYSHDTL PQGVKGCEDY NEMVPTSHVT AENILQDGSK  300
ATLKYHGIRR RCLQFGEAAS NALGSNVKLN ATSNKIIMVK PSELVTSLCP QRGSGNFPLT  360
GPKPTGIGLH INRIMNAIPT GQAATMGVRL SDGSQGMKST SSIRLQRIEN VKRSILSSNV  420
DGRSLVNTRT ESHEIDDTGN SEDFNIPSSP CQKKKKISET ADDDGCKHCN CKKSRCLKLY  480
CHCFAAGTYC TDPCACQGCL NRPEYAETVV ETKQLIESRD PSAFDPKIVL PTTDISSHMD  540
DENLTTPSSA RHKRGCNCKR SMCLKKYCEC YQANVGCSSG CRCEGCKNVY GKKEDYVAFE  600
HTSSKERESS IVEEGSDYTF HKKLERVASK TVYGLHCLSP ITPSLQCSEQ GKEAAKSIII  660
SGNYLPSPES DVNMFASCAN YTKSSENLHS SQALLGTNEM LGSTPYDSQI ECSHAALLQL  720
TPPLSNPELC GTSSFSSIAN EWRNISQSQP THGCISQLPS GSLCWRSSPL TPSNRVGEAQ  780
YFQCSESDSR LFDILENETP DVLKEASTPM TSVKINSPTQ KRVSPPQSRH FEIGSSSSGG  840
LRSDRKFIFE SVPSFPSLSP CVNSKSNGDD DEEDIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1746758912121Protein lin-54 homolog
5fd3_B1e-1746758912121Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.84700.0cotyledon| hypocotyl| meristem| seed coat| somatic embryo| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO42181860.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G223500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0101650.0AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979628.10.0CRC domain-containing protein TSO1-like isoform X3
TrEMBLA0A445H5360.0A0A445H536_GLYSO; CRC domain-containing protein TSO1 isoform A
TrEMBLI1M9K00.0I1M9K0_SOYBN; Uncharacterized protein
STRINGGLYMA14G14750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-55Tesmin/TSO1-like CXC domain-containing protein