PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G207500.1.p
Common NameGLYMA_09G207500, LOC100812829
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 801aa    MW: 88979.8 Da    PI: 5.9158
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G207500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2086141156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Glyma.09G207500.1.p  86 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 141
                          688899***********************************************998 PP
2START150.21.9e-472865102206
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                          la + ++elvk+ + +ep+W +s   e + evl  +e ++              ++ea+r++ vv+m++++lv  +ld   +W e ++  
  Glyma.09G207500.1.p 286 LAASSMAELVKMCQTNEPLWIRST--ESEREVLNFEEHARMfawpqnlkhrseLRTEASRDTSVVIMNSVTLVDAFLDAQ-KWMELFPti 372
                          78899*******************..8888888777776668888999***9****************************.9*9999999 PP

                          ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                            +a+t++ issg      g+lqlm+ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vds  ++  ++s+ R  ++ Sg++i+++
  Glyma.09G207500.1.p 373 vsRAKTVQIISSGasglasGTLQLMYAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDSFHQNF-HPSYPRYCRRSSGCVIQDM 461
                          99***************************************************************99999.9****************** PP

                          CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +ng+s+vtwveh+ ++++ +h+++   v sg+a+ga++w+  lqrqce+
  Glyma.09G207500.1.p 462 PNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCER 510
                          ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1974144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-2180148IPR009057Homeodomain-like
PROSITE profilePS5007116.92583143IPR001356Homeobox domain
SMARTSM003898.8E-1984147IPR001356Homeobox domain
CDDcd000863.57E-1886144No hitNo description
PfamPF000467.3E-1886141IPR001356Homeobox domain
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PROSITE profilePS5084843.324276513IPR002913START domain
SuperFamilySSF559611.06E-31277512No hitNo description
CDDcd088751.40E-113280509No hitNo description
SMARTSM002341.1E-31285510IPR002913START domain
PfamPF018521.0E-39286510IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-5342473IPR023393START-like domain
SuperFamilySSF559612.2E-19537706No hitNo description
SuperFamilySSF559612.2E-19736776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MYGDCQVMSS MGGNVVVNPD TLFSSSIQNS SFNFIPTMPF QPFPSMKEED GILRGKEEVE  60
SGSGSEQLVE DKSGNEQESH EQPTKKKRYH RHTARQIQEM EALFKECPHP DDKQRLKLSH  120
ELGLKPRQVK FWFQNRRTQM KAQQDRADNV ILRAENESLK SENYRLQAAL RNVICPNCGG  180
PCIMGADMGL DEHQVRIENA RLREELERVC CLTTRYTGRP IQTMATGPTL MAPSLDLDMS  240
IYPRHFADTI APCTEMIPVP MLPPEASPFS EGGILMEEEK SLTLELAASS MAELVKMCQT  300
NEPLWIRSTE SEREVLNFEE HARMFAWPQN LKHRSELRTE ASRDTSVVIM NSVTLVDAFL  360
DAQKWMELFP TIVSRAKTVQ IISSGASGLA SGTLQLMYAE FQVLSPLVST RETHFLRYCQ  420
QNAEEGTWAI VDFPVDSFHQ NFHPSYPRYC RRSSGCVIQD MPNGYSRVTW VEHAKVEEKP  480
VHQIFCNYVY SGMAFGAQRW LGVLQRQCER VASLMARNIS DLGAIPSPEA RKNLMKLAQR  540
MIKTFSLNMS TSGGQSWTAI SDSPEDTVRI TTRKITEPGQ PNGVILSAVS TTWLPYSHTK  600
VFDLLRDERR RSQMDALSNG NSLNEVAHIA NGSHPGNCIS LLRINVASNS SQNVELMLQE  660
NCTDQSGSIV VYTTIDVDSI QLAMSGEDPS CIALLPQGFK IVPMSSPPNN VDTPIIDAAT  720
NSSSEPPPSL NNNNSGGCLL TMGLQVLAST IPSAKLNLSS VTAINNHLCN TLHQIEAALS  780
SSSSHENGNG SFLCTEPTKQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.130150.0cotyledon| flower| leaf| seed coat
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G207500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-145AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587604.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLK7LF400.0K7LF40_SOYBN; Uncharacterized protein
STRINGGLYMA09G34061.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Representative plantOGRP94751113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7