PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G207300.1.p
Common NameGLYMA_09G207300, LOC100798081
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 391aa    MW: 43808.7 Da    PI: 9.5364
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G207300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-32209262255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.09G207300.1.p 209 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 262
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15206262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28207262IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-24209262IPR006447Myb domain, plants
PfamPF002496.8E-7210261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNAK PTSSWRRSTE EDMDLGFWKR ALDSRNSIQS MAKQDSCFDL  60
SLSNPKASDN NNNHHSNTTT SNLIHHHHFQ NGATPTNATT TTTNPFQLPF QKNHYFHQQQ  120
QPLFQPQHQS LSQDLGFLRP IRGIPVYQNP PPIPFTQHHH HHHLPLEAST TTPSIISNTN  180
NGSTPFHSQA LMRSRFLSRF PAKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL  240
ELMDVKDLTL AHVKSHLQMY RTVKTTDRAA ASSGQSDVYD NGSSGDTSDD LMFDIKSSRR  300
SDLSVKQGRS SVNQDKEYHG LWGNSSREAW LHGKTKTDSV GNVPFSLEKE MDPKCLSYER  360
ISDGSSSSNL SGSSPKKPNL DLEFSLGQPL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.325300.0flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G207300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587600.10.0probable transcription factor KAN2
RefseqXP_028182074.10.0probable transcription factor KAN2
SwissprotQ9C6164e-75KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A445J3V00.0A0A445J3V0_GLYSO; Putative transcription factor KAN2
TrEMBLK7LF360.0K7LF36_SOYBN; Uncharacterized protein
STRINGGLYMA09G34030.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-76G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]