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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G206600.2.p | ||||||||
Common Name | GLYMA_09G206600, LOC100794897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 491aa MW: 54361.6 Da PI: 4.7981 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.7 | 1.4e-36 | 21 | 112 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+++ed++++ ++sws+++nsf+v+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k Glyma.09G206600.2.p 21 FLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 101 9********************999*****************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i r+k Glyma.09G206600.2.p 102 HLLRSITRRKP 112 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.6E-40 | 14 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.54E-36 | 16 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-64 | 17 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 21 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-32 | 21 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MEGGGSTPAA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPEFARDLL 60 PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLRSITRR KPAHGQNHQQ 120 PQQPHGQSSS VGACVEVGKF GLEEEVERLK RDKNVLMQEL VRLRQQQQTT DNQMQTMVQR 180 LQGMEQRQQQ MMSFLAKAVQ SPGFFAQFVQ QQNDSNRRIT EVNKKRRLKQ EGMAETEHAA 240 APDGQIIKYQ PMMNEAAKEM LRQVMKWDTS RVESLNKNSD NYMIGDASSS SSGMDSSSSS 300 GWTSGVTLKE VSPASVQSSH IQAATGTQGH VPSIVKPEIL SVSQAVASEK VMNDGAHDPP 360 SIPVSRADVM IPDLPSITEM VAGNILDIPE ENYMATETDE GYMDPSLGAG GSFPIDFEGI 420 SPDADIDDLL ANPIWDEILQ TSVPEDIDTN VAEVSKGNEV QPTENGWNNT RHMDHLTEQM 480 GLLSSNAKRP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-29 | 1 | 110 | 8 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-29 | 1 | 110 | 8 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-29 | 1 | 110 | 8 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 229 | NKKRRLKQ |
2 | 223 | 228 | KKRRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12881 | 0.0 | leaf| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G206600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534283.1 | 0.0 | heat shock factor protein HSF8 | ||||
Refseq | XP_006587598.1 | 0.0 | heat shock factor protein HSF8 | ||||
Refseq | XP_028182065.1 | 0.0 | heat shock factor protein HSF8-like | ||||
Refseq | XP_028182066.1 | 0.0 | heat shock factor protein HSF8-like | ||||
Swissprot | Q9LQM7 | 1e-169 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | A0A445J3T7 | 0.0 | A0A445J3T7_GLYSO; Heat stress transcription factor A-1d isoform A | ||||
TrEMBL | I1L4Z0 | 0.0 | I1L4Z0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G33920.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-123 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G206600.2.p |
Entrez Gene | 100794897 |
Publications ? help Back to Top | |||
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