PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G206600.1.p
Common NameGLYMA_09G206600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 501aa    MW: 55532.9 Da    PI: 4.6727
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G206600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.5e-34211222102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.XTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.kekiweFkhksFkkgk 90 
                          Fl+k+y+++ed++++ ++sws+++nsf+v+d+ efa+++LpkyFkh+nf+SFvRQLn+Y F   +      ++ +++ weF+++ F +g+
  Glyma.09G206600.1.p  21 FLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYVFDFDDVVMCGFRKvDPDRWEFANEGFLRGQ 110
                          9********************999***********************************99998888887666359************** PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          k+ll++i r+k 
  Glyma.09G206600.1.p 111 KHLLRSITRRKP 122
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3516120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5717120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-3818120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-3021120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-152144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-155971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-157284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEGGGSTPAA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPEFARDLL  60
PKYFKHNNFS SFVRQLNTYV FDFDDVVMCG FRKVDPDRWE FANEGFLRGQ KHLLRSITRR  120
KPAHGQNHQQ PQQPHGQSSS VGACVEVGKF GLEEEVERLK RDKNVLMQEL VRLRQQQQTT  180
DNQMQTMVQR LQGMEQRQQQ MMSFLAKAVQ SPGFFAQFVQ QQNDSNRRIT EVNKKRRLKQ  240
EGMAETEHAA APDGQIIKYQ PMMNEAAKEM LRQVMKWDTS RVESLNKNSD NYMIGDASSS  300
SSGMDSSSSS GWTSGVTLKE VSPASVQSSH IQAATGTQGH VPSIVKPEIL SVSQAVASEK  360
VMNDGAHDPP SIPVSRADVM IPDLPSITEM VAGNILDIPE ENYMATETDE GYMDPSLGAG  420
GSFPIDFEGI SPDADIDDLL ANPIWDEILQ TSVPEDIDTN VAEVSKGNEV QPTENGWNNT  480
RHMDHLTEQM GLLSSNAKRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2611208129Heat shock factor protein 1
5d5v_B2e-2611208129Heat shock factor protein 1
5d5v_D2e-2611208129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232239NKKRRLKQ
2233238KKRRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.128810.0leaf| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G206600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534283.10.0heat shock factor protein HSF8
RefseqXP_006587598.10.0heat shock factor protein HSF8
RefseqXP_028182065.10.0heat shock factor protein HSF8-like
RefseqXP_028182066.10.0heat shock factor protein HSF8-like
SwissprotQ9LQM71e-166HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A0R0IB420.0A0A0R0IB42_SOYBN; Uncharacterized protein
STRINGGLYMA09G33920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-120heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]