PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G199800.1.p | ||||||||
Common Name | GLYMA_09G199800, LOC100775390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 513aa MW: 56063.4 Da PI: 7.1974 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.5 | 3.7e-14 | 222 | 281 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+ ++ a++k++g Glyma.09G199800.1.p 222 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARSYDLAALKYWG 281 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 50.5 | 5.1e-16 | 324 | 375 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Glyma.09G199800.1.p 324 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 375 57****************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.08E-17 | 222 | 291 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-11 | 222 | 281 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.26E-21 | 222 | 291 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-15 | 223 | 290 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 223 | 289 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-29 | 223 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 224 | 235 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-11 | 324 | 383 | No hit | No description |
SuperFamily | SSF54171 | 6.47E-18 | 324 | 384 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-10 | 324 | 375 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-18 | 325 | 383 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.164 | 325 | 383 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-31 | 325 | 389 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 365 | 385 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MARASTNWLS FSLSPMDMLR TPEPQFVQYD AASDTSSHHY YLDNLYTNGW GNGSLKFEQN 60 LNHSDVSFVQ SSSQSVSHAP PKLEDFLGDS SAVMRYSDSQ TETQDSSLTH IYDHHHHHHH 120 GSSAYFGGDH QDLKAITGFQ AFSTNSGSEV DDSASIGKAQ GSEFGTHSIE SSVNEFAAFS 180 GGTNTGGTLS LAVAQSSEKA VAAAAESDRS KKVVDTFGQR TSIYRGVTRH RWTGRYEAHL 240 WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR SYDLAALKYW GPTATTNFPV SNYSKEVEEM 300 KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE 360 EAAEAYDIAA IKFRGANAVT NFEMNRYDVE AIMKSSLPVG GAAKRLKLSL ESEQKALPVS 420 SSSSSSQQQN PQCGNVSASI NFSSIHQPIA SIPCGIPFDS TTAYYHHNLF QHFHPTNAGT 480 AASAVTSANA NALTALPPTA AAEFFIWPHQ SY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21879 | 0.0 | root| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G199800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006587577.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A0R0IAV8 | 0.0 | A0A0R0IAV8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G02760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4810 | 31 | 49 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-160 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G199800.1.p |
Entrez Gene | 100775390 |
Publications ? help Back to Top | |||
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