PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G196500.1.p
Common NameGLYMA_09G196500, LOC102659381
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 281aa    MW: 30877.8 Da    PI: 6.671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G196500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.4e-12113153343
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                          +WT+ E+el+v++  ++G+g+W++Ia+++  ++t+ q++s+
  Glyma.09G196500.1.p 113 SWTQGEHELFVKGLIKYGKGDWAKIAEEFVCNKTPQQVQSY 153
                          7*****************************899*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.02106162IPR017930Myb domain
SMARTSM007171.2E-8110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-11111162IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-8112159IPR006447Myb domain, plants
SuperFamilySSF466891.05E-11113162IPR009057Homeodomain-like
CDDcd001679.70E-10113154No hitNo description
PfamPF002494.2E-10113153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVLEIIDLTN SPPSSPSKSL NESVTLTSNK RIQFEHAPLP IMADTNPNLS QTNQQQTTLC  60
PIPRQTYGPS QIVNRFPSVM QGGDVTILDP ITGSNTNLVS HGARLKEPCL YESWTQGEHE  120
LFVKGLIKYG KGDWAKIAEE FVCNKTPQQV QSYAIIFFKN LQQSVNPPPP TYSYGYSSKN  180
PTYFAPYPMS RNLNPMVDPS ASNSMSMIVN QSQQLFTPVP MNVPFPLVPQ YGEASTSTNT  240
NTIAYGFQTH TSGATAGTSM HAIANDNKEI DLELRLGRNN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G196500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587546.10.0uncharacterized protein LOC102659381
TrEMBLK7LEW50.0K7LEW5_SOYBN; Uncharacterized protein
STRINGGLYMA09G32895.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14942612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-12MYB family protein