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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G194300.1.p | ||||||||
Common Name | GLYMA_09G194300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 178aa MW: 20401 Da PI: 5.9403 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32 | 2.1e-10 | 97 | 152 | 30 | 83 |
..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 30 keesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFk 83 + ++ + ++d++g ++e+ l+ k+s + yvl +GW +F+++++L e+D++ ++ Glyma.09G194300.1.p 97 VRDGIPVNVYDKHGHEFEMMLKKfHKGSISyYVLNRGWLSFCNQQHLGENDIIALR 152 35667899*************6556666667*********************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.01E-8 | 90 | 167 | No hit | No description |
SuperFamily | SSF101936 | 9.22E-9 | 95 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-7 | 96 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-8 | 99 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MTENSSSNSG KGKNIIDEQQ HEESGKSEEG NNNRLVNEIL SYNESQLKFL LNVGIVKDCE 60 LSMPYITQLT SDKWNLFLRT PQFEGIFLGF LKEGEDVRDG IPVNVYDKHG HEFEMMLKKF 120 HKGSISYYVL NRGWLSFCNQ QHLGENDIIA LRTFRHAITD KLSFVVTYSN LVEFGRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G194300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152898.1 | 1e-61 | hypothetical protein PHAVU_004G169400g | ||||
TrEMBL | A0A0R0IAI7 | 1e-128 | A0A0R0IAI7_SOYBN; Uncharacterized protein | ||||
STRING | XP_007152898.1 | 5e-61 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21340 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 1e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G194300.1.p |