PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G191600.1.p
Common NameGLYMA_09G191600, LOC100777698
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 560aa    MW: 60361.2 Da    PI: 7.1473
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G191600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-1488127242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Glyma.09G191600.1.p  88 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 127
                          89**************************.********9875 PP
2TCR512.9e-16172211140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.09G191600.1.p 172 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 211
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1787127IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.00388212IPR005172CRC domain
PfamPF036382.8E-1189124IPR005172CRC domain
SMARTSM011148.4E-20172213IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12175210IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGEGGEGEGD CAPKNASLSE VVAPAKKLAR QLDFTGAPEH PQLSQPPQLP VAVLPLQPQA  60
PHARVGKPES PKSRSRPNFE IKDATPKKQK QCNCKHSKCL KLYCECFASG IYCDGCNCVN  120
CFNNVENEAA RREAVEATLE RNPNAFRPKI ASSPHGTRDS REEAGEVLIL GKHNKGCHCK  180
KSGCLKKYCE CFQANILCSE NCKCMDCKNF EGSEERQALF HGDQNNNMAY IQQAANAAIT  240
GAIGSSGYSS PPVSKKRKGQ ELFFWPTTKD PSISKLGQQV NHVRGPAPSS SLSPVSGARV  300
GTATLGPSKF MYRSLLADII QPQHLKELCS VLVLVSGQAA KTLTDQKILM EKQAEDQTET  360
SLASSSQEQL PSQKEGRVEK TVADDCSSAN QTDKISPDNS SSDGADVPKG RPMSPGTLAL  420
MCDEQDTMFM TAASPIAPMA HACNTSSQFP YGQEMTEVYA EQERIVLTKF RDFLNRVITM  480
GEINETKCSS LARNELESQK DPIINGIGNT SSEIVLQHGT TSNGVTKPAV SPLATTSTSM  540
IPGNIAENGE TKVKIEKEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-32802212132Protein lin-54 homolog
5fd3_B2e-32802212132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.295490.0epicotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G191600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-177AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533391.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLK7LET30.0K7LET3_SOYBN; Uncharacterized protein
STRINGGLYMA09G32420.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-177Tesmin/TSO1-like CXC domain-containing protein