PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G183500.1.p

Common Name

GLYMA_09G183500, LOC100806942

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 274aa MW: 30644.7 Da PI: 6.5172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G183500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	7.8e-08	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Glyma.09G183500.1.p 166 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 213 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.13E-9	160	217	No hit	No description
SuperFamily	SSF47459	1.57E-15	160	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-15	162	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.723	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-5	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-7	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAEFTENMQL QSNIIRPSQF PFLEIDPSME LLNQFIGMNQ HVLENSNLST MHNLVPFSCD 60 TFLGPQEPEF PGNLEENFPA LVNHNALPVS LPIFQAENEI HEGKKRKSVD LPETSSANST 120 PAVSESGSKI KHSSGRGKRV KSNVTEEEKA KEVVHVRARR GQATDSHSLA ERVRRGKINE 180 KLRCLQNIVP GCYKTMGMAV MLDEIINYVQ SLQHQVEFLS LKLTAASTFY DFNSETDALE 240 TMQRARASEA KELGKYKKEG YGGVSFFQPA WPL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G183500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031256	0.0	KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533364.1	0.0	transcription factor BEE 1
Refseq	XP_028180470.1	0.0	transcription factor BEE 1-like
Swissprot	Q8GWK7	5e-65	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A445J2M3	0.0	A0A445J2M3_GLYSO; Transcription factor BEE 3
TrEMBL	K7LEP5	0.0	K7LEP5_SOYBN; Uncharacterized protein
STRING	GLYMA09G31580.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	5e-64	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	Glyma.09G183500.1.p
Entrez Gene	100806942

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]