PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G178000.3.p
Common NameGLYMA_09G178000, LOC778073
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 971aa    MW: 108389 Da    PI: 4.9747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G178000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09436480246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT eEd+ l+  v+ +G ++W  Ia+ +g+ Rt+ qc  r+q 
  Glyma.09G178000.3.p 436 GAWTNEEDKSLLLIVQDMGIRNWFDIAASLGTSRTPFQCLARFQR 480
                          79***************************************9995 PP
2Myb_DNA-binding383.7e-12490532346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           WT+eEd +l  av+ +G ++W ++a+ +  +Rt+ qc +rw k
  Glyma.09G178000.3.p 490 EWTEEEDSQLCSAVACFGARDWQSVASVLE-RRTGTQCSNRWKK 532
                          7*****************************.***********87 PP
3Myb_DNA-binding40.56.3e-13539582146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eEd +l  av ++G + W+ Ia++++ gR   qc++r+++
  Glyma.09G178000.3.p 539 KGSFTQEEDIRLTVAVMLFGRK-WNQIANYVP-GRIQSQCRDRYLN 582
                          799*****************99.*********.***********98 PP
4Myb_DNA-binding476.1e-15592633346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           WT+eEd++l  a+ ++G   W++Ia++++  Rt+ qc+ rw  
  Glyma.09G178000.3.p 592 GWTEEEDLRLEAAIVKHGYC-WSKIAEEVP-PRTDSQCRKRWKV 633
                          5*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.645331427IPR017877Myb-like domain
SMARTSM007170.014335431IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-11338354IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-11402441IPR009057Homeodomain-like
SuperFamilySSF466893.59E-16411479IPR009057Homeodomain-like
PROSITE profilePS500909.605430482IPR017877Myb-like domain
SMARTSM007176.9E-9434484IPR001005SANT/Myb domain
CDDcd001679.41E-7437482No hitNo description
PfamPF139215.0E-14438499No hitNo description
Gene3DG3DSA:1.10.10.604.3E-14442495IPR009057Homeodomain-like
PROSITE profilePS5129416.388483538IPR017930Myb domain
SuperFamilySSF466892.02E-21487580IPR009057Homeodomain-like
SMARTSM007177.7E-8487536IPR001005SANT/Myb domain
CDDcd001674.88E-10490532No hitNo description
Gene3DG3DSA:1.10.10.601.6E-16496545IPR009057Homeodomain-like
SMARTSM007172.7E-12538586IPR001005SANT/Myb domain
PfamPF002496.1E-12539582IPR001005SANT/Myb domain
PROSITE profilePS512949.821539584IPR017930Myb domain
CDDcd001671.49E-7541584No hitNo description
Gene3DG3DSA:1.10.10.602.1E-18546591IPR009057Homeodomain-like
SuperFamilySSF466891.1E-22564635IPR009057Homeodomain-like
PROSITE profilePS5129421.803585639IPR017930Myb domain
SMARTSM007175.1E-13589637IPR001005SANT/Myb domain
PfamPF002491.7E-13592633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-16592634IPR009057Homeodomain-like
CDDcd001677.01E-13593634No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 971 aa     Download sequence    Send to blast
MTPRVDDFEK DDLSASDDDD DDDDDGLKED MAALARACTI AVPCPDDNST AEDDVPAEDP  60
LLHAGDSIVP AATDSDDDQD DLECLKRVQS LYQPLSVLPP LTPPAAVSDD DDDGVDDLET  120
VRAIMKRFST YGEGSHEGGM QMLVEGDQTS SPGYEGDIAN GSIHYESDAG ELCPVSQDPN  180
EAATEELIEN VEMKLSDFVE SSEPDAYESS KLPQKRLSCP PVVRCFVDAI NKNRDLQRFI  240
RSKLIELEAK IEENKKIRNK IKILKDFQAS CTRRTGNALS MKKDPRVQLI SSKKPFAPKN  300
SKKHKKASAM CYGPEENSHV ANYRMVLERF PLSLDRKKWS SVERESLLKG IKQQFQEMVL  360
QLSLSVDSSE GLLGDANDMD NVIASVKDLE ITPERIRQFL PKVNWDLIAS MYVGGRNGAE  420
CESRWLNCED PLINQGAWTN EEDKSLLLIV QDMGIRNWFD IAASLGTSRT PFQCLARFQR  480
SLNPAMLNSE WTEEEDSQLC SAVACFGARD WQSVASVLER RTGTQCSNRW KKSICPEKKG  540
SFTQEEDIRL TVAVMLFGRK WNQIANYVPG RIQSQCRDRY LNSLDPSLKW GGWTEEEDLR  600
LEAAIVKHGY CWSKIAEEVP PRTDSQCRKR WKVLCPECVP LLQEARKKRR SIIGSNFVDR  660
ESERPAITLN DFLPSPALAP KSDVGASNLC KKRKSSNVPK ETSKKCIKRT RLRTKEVQDT  720
EVYSDDGIKT CGEVVSACRN VSKKMRSKRH TKNTQNCPKE VVDISCSDKV KTCIESSESQ  780
STFIASSGNQ DSDNITIVCF LRDKSKEMLS RFTKDLCQAS FSARITDVSR QVESQDPFDD  840
QIISLSQSCD TVGTKNLFVQ QKAASDTLVG TPEDANTLTG NDDDMTLACF LGNKPKKGSQ  900
AANRRSACSS TIIIPDGSGL SRSKHVEEET VLHGGVAEPM DIVVEKKDDE LLTSLQNRPT  960
RQRKRPSRFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-284046317155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-284046317155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1627649RKRWKVLCPECVPLLQEARKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.285930.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G178000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-154AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587481.10.0uncharacterized protein LOC778073 isoform X2
TrEMBLK7LEK70.0K7LEK7_SOYBN; Uncharacterized protein
STRINGGLYMA09G30891.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-163myb domain protein 4r1