PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G178000.2.p
Common NameGLYMA_09G178000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 967aa    MW: 107978 Da    PI: 4.9719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G178000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09432476246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT eEd+ l+  v+ +G ++W  Ia+ +g+ Rt+ qc  r+q 
  Glyma.09G178000.2.p 432 GAWTNEEDKSLLLIVQDMGIRNWFDIAASLGTSRTPFQCLARFQR 476
                          79***************************************9995 PP
2Myb_DNA-binding38.13.7e-12486528346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           WT+eEd +l  av+ +G ++W ++a+ +  +Rt+ qc +rw k
  Glyma.09G178000.2.p 486 EWTEEEDSQLCSAVACFGARDWQSVASVLE-RRTGTQCSNRWKK 528
                          7*****************************.***********87 PP
3Myb_DNA-binding40.56.2e-13535578146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eEd +l  av ++G + W+ Ia++++ gR   qc++r+++
  Glyma.09G178000.2.p 535 KGSFTQEEDIRLTVAVMLFGRK-WNQIANYVP-GRIQSQCRDRYLN 578
                          799*****************99.*********.***********98 PP
4Myb_DNA-binding476e-15588629346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           WT+eEd++l  a+ ++G   W++Ia++++  Rt+ qc+ rw  
  Glyma.09G178000.2.p 588 GWTEEEDLRLEAAIVKHGYC-WSKIAEEVP-PRTDSQCRKRWKV 629
                          5*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.645327423IPR017877Myb-like domain
SMARTSM007170.014331427IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-11334350IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-11398437IPR009057Homeodomain-like
SuperFamilySSF466893.56E-16407475IPR009057Homeodomain-like
PROSITE profilePS500909.605426478IPR017877Myb-like domain
SMARTSM007176.9E-9430480IPR001005SANT/Myb domain
CDDcd001679.45E-7433478No hitNo description
PfamPF139215.0E-14434495No hitNo description
Gene3DG3DSA:1.10.10.604.3E-14438491IPR009057Homeodomain-like
PROSITE profilePS5129416.388479534IPR017930Myb domain
SMARTSM007177.7E-8483532IPR001005SANT/Myb domain
SuperFamilySSF466892.05E-21483576IPR009057Homeodomain-like
CDDcd001674.95E-10486528No hitNo description
Gene3DG3DSA:1.10.10.601.6E-16492541IPR009057Homeodomain-like
SMARTSM007172.7E-12534582IPR001005SANT/Myb domain
PfamPF002496.1E-12535578IPR001005SANT/Myb domain
PROSITE profilePS512949.821535580IPR017930Myb domain
CDDcd001671.53E-7537580No hitNo description
Gene3DG3DSA:1.10.10.602.1E-18542587IPR009057Homeodomain-like
SuperFamilySSF466891.1E-22560631IPR009057Homeodomain-like
PROSITE profilePS5129421.803581635IPR017930Myb domain
SMARTSM007175.1E-13585633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-16588630IPR009057Homeodomain-like
PfamPF002491.7E-13588629IPR001005SANT/Myb domain
CDDcd001677.04E-13589630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MTPRVDDFEK DDLSASDDDD DDDDDGLKED MAALARACTI AVPCPDDNST AEDDVPAEDP  60
LLHAGDSIVP AATDSDDDQD DLECLKRVQS LYQPLSVLPP LTPPAAVSDD DDDGVDDLET  120
VRAIMKRFST YGEGGMQMLV EGDQTSSPGY EGDIANGSIH YESDAGELCP VSQDPNEAAT  180
EELIENVEMK LSDFVESSEP DAYESSKLPQ KRLSCPPVVR CFVDAINKNR DLQRFIRSKL  240
IELEAKIEEN KKIRNKIKIL KDFQASCTRR TGNALSMKKD PRVQLISSKK PFAPKNSKKH  300
KKASAMCYGP EENSHVANYR MVLERFPLSL DRKKWSSVER ESLLKGIKQQ FQEMVLQLSL  360
SVDSSEGLLG DANDMDNVIA SVKDLEITPE RIRQFLPKVN WDLIASMYVG GRNGAECESR  420
WLNCEDPLIN QGAWTNEEDK SLLLIVQDMG IRNWFDIAAS LGTSRTPFQC LARFQRSLNP  480
AMLNSEWTEE EDSQLCSAVA CFGARDWQSV ASVLERRTGT QCSNRWKKSI CPEKKGSFTQ  540
EEDIRLTVAV MLFGRKWNQI ANYVPGRIQS QCRDRYLNSL DPSLKWGGWT EEEDLRLEAA  600
IVKHGYCWSK IAEEVPPRTD SQCRKRWKVL CPECVPLLQE ARKKRRSIIG SNFVDRESER  660
PAITLNDFLP SPALAPKSDV GASNLCKKRK SSNVPKETSK KCIKRTRLRT KEVQDTEVYS  720
DDGIKTCGEV VSACRNVSKK MRSKRHTKNT QNCPKEVVDI SCSDKVKTCI ESSESQSTFI  780
ASSGNQDSDN ITIVCFLRDK SKEMLSRFTK DLCQASFSAR ITDVSRQVES QDPFDDQIIS  840
LSQSCDTVGT KNLFVQQKAA SDTLVGTPED ANTLTGNDDD MTLACFLGNK PKKGSQAANR  900
RSACSSTIII PDGSGLSRSK HVEEETVLHG GVAEPMDIVV EKKDDELLTS LQNRPTRQRK  960
RPSRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-284006277155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-284006277155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1623645RKRWKVLCPECVPLLQEARKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.285930.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G178000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-152AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181846.10.0uncharacterized protein LOC114368789 isoform X2
TrEMBLA0A0R0I9U90.0A0A0R0I9U9_SOYBN; Uncharacterized protein
STRINGGLYMA09G30891.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-163myb domain protein 4r1