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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.09G170200.1.p |
| Common Name | GLYMA_09G170200, LOC100800187 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 475aa MW: 53199.4 Da PI: 8.8944 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G170200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.5 | 5.6e-06 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C++ F r nL+ H r+H
Glyma.09G170200.1.p 57 YVCEICNQGFQRDQNLQMHRRRH 79
9*********************9 PP
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| 2 | zf-C2H2 | 14.4 | 0.00011 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C+k + +s++k H++t+
Glyma.09G170200.1.p 134 WVCERCSKGYAVQSDYKAHLKTC 156
58*******************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MLANNLSPSS VPTSEPFPCT ENGTATNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI 120
KKHFRRKHSN HKQWVCERCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180
ACNMGRLRPE SQPLQPSACL SRTASSPSPS SETNFSTAPW PTRMIIPKPS EPPTIFMNNP 240
ITAITTAETS SKSNNKLLHP NLDLQLSTPT TTNNTSNVAN RIDAAISPKR DHHHHHENHS 300
THLQLSIGSS DMSEKNESNR NSSEKSSNSN INDQNNNNKQ SNNMALLRVQ EQAREHLRIA 360
MAEKAYAEEA RKQAKRQIEL AEQEFTNAKR IRQQAQAELD KAYSLKEHAM KQINSTMLQI 420
TCHGCKQQFQ ARNAATTPDE NSLVLSYVSS AITTEGGGEV ENDNNAKDHG KDNN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}. |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015044 | 1e-178 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Arendsee ZW,Li L,Wurtele ES
Coming of age: orphan genes in plants.
Trends Plant Sci., 2014. 19(11): p. 698-708
[PMID:25151064] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
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