PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 292aa MW: 33250.3 Da PI: 8.4511

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G139000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.6e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl Glyma.09G139000.1.p 15 KGLWSPEEDNKLRNHIIKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	50.3	5.4e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++ E + + ++++lG++ W+ Ia++++ gRt++++k++w++yl Glyma.09G139000.1.p 68 RGVFSKHEKDTIMALHHMLGNK-WSQIAQHLP-GRTDNEVKNYWHSYL 113 899*****************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-22	9	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.994	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	9.18E-28	13	109	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-11	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-13	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	4.64E-10	18	62	No hit	No description
PROSITE profile	PS51294	23.928	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-24	66	118	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-14	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	4.10E-9	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MESKPLEKAK PKYRKGLWSP EEDNKLRNHI IKHGHGCWSS VPIKAGLQRN GKSCRLRWIN 60 YLRPGLKRGV FSKHEKDTIM ALHHMLGNKW SQIAQHLPGR TDNEVKNYWH SYLKKKVIKA 120 KEMESDKQIQ HAGSSSDTVE NALSPQKLAT QDSSYGLLEN LDKSIAQNDN FFSKSYNFSK 180 EAYQSSLPLP KLLFSEWLSV DQVNGGISVN SDDSLVLGNE FDQNSTFQEA IMHMLEENFG 240 EEYHNRLIHS STTEVYNSQI KSTNQMDGSD FMNCIPGNEL RSNFSLTNHG M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-23	11	117	23	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20126	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269\|PubMed:11581165}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G139000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006587316.1	0.0	transcription factor LAF1
Refseq	XP_028180153.1	0.0	transcription factor LAF1-like
Swissprot	Q9M0K4	5e-60	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A0B2Q5D6	0.0	A0A0B2Q5D6_GLYSO; Transcription factor LAF1
TrEMBL	K7LDT3	0.0	K7LDT3_SOYBN; Uncharacterized protein
STRING	GLYMA09G25655.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3830	31	61
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	2e-62	myb domain protein 18

Link Out ? help Back to Top
Phytozome	Glyma.09G139000.1.p
Entrez Gene	100794713

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]