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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.09G117200.2.p |
| Common Name | GLYMA_09G117200, LOC100818507 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
B3 |
| Protein Properties |
Length: 400aa MW: 45227.5 Da PI: 6.8629 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G117200.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 49.3 | 8.6e-16 | 71 | 151 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+ + lpkkf++++g + + l+ +g +W++ + +k++g+++++kGWkeF+ L+ g + F+++g+s f v++f++
Glyma.09G117200.2.p 71 ADGILLPKKFTRKYGDGMSN--PVFLKPADGTEWKIHY--TKHGGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHF--DVHIFDS 151
35589*********766444..5***************..**********************************9999..9999986 PP
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| 2 | B3 | 54.8 | 1.8e-17 | 275 | 362 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
ff ++++ + l +p +fae++ +k ++ ++le ++gr+W+v + + ++ lt+GW++F+++n+L++gD++vF+l+++ ++
Glyma.09G117200.2.p 275 FFRLVMKPSFINGYYLEIPPQFAERYLKK--THAIVILEILDGRTWSVIC--SATR----LTEGWQKFASENNLNVGDVCVFELIQKiQG 356
6677788888888999**********544..455899999**********..6666....*************************98677 PP
E..EEE CS
B3 90 felvvk 95
++v+
Glyma.09G117200.2.p 357 LCFKVS 362
655555 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MLQINISSSQ EAIALFFFFF ISFSALLSQK SHFAFTLRSH LRIHNMTSAR NKHPLPPAVH 60
FVKIILTTSL ADGILLPKKF TRKYGDGMSN PVFLKPADGT EWKIHYTKHG GEIWFQKGWK 120
EFATYYSLDH GHLLFFEYEG TSHFDVHIFD SSALEIDYPS HGTHEGKDNL VEISDDSVEI 180
LGEQFSCQNT RGSSPQPCKK MKNSITTNVE RSPNVVNLHQ HVPTISNSSQ KATFMKQMLD 240
EDDGIGIFNT EYPKVEQSTS TALKKASTFR SEHPFFRLVM KPSFINGYYL EIPPQFAERY 300
LKKTHAIVIL EILDGRTWSV ICSATRLTEG WQKFASENNL NVGDVCVFEL IQKIQGLCFK 360
VSIYQGAEEP ICPISQACAD GLCQKAFSKR EAEVDDDTL*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 3e-15 | 262 | 365 | 35 | 141 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 3e-15 | 262 | 365 | 35 | 141 | B3 domain-containing transcription factor VRN1 |
| Search in ModeBase |
