PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G117200.1.p
Common NameGLYMA_09G117200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 529aa    MW: 60548.4 Da    PI: 9.5505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G117200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-15711511399
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           + + lpkkf++++g    +   + l+  +g +W++ +  +k++g+++++kGWkeF+    L+ g  + F+++g+s f   v++f++
  Glyma.09G117200.1.p  71 ADGILLPKKFTRKYGDGMSN--PVFLKPADGTEWKIHY--TKHGGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHF--DVHIFDS 151
                          35589*********766444..5***************..**********************************9999..9999986 PP
2B354.12.8e-17275362195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                          ff   ++++  +   l +p +fae++ +k  ++  ++le ++gr+W+v +  + ++    lt+GW++F+++n+L++gD++vF+l+++ ++
  Glyma.09G117200.1.p 275 FFRLVMKPSFINGYYLEIPPQFAERYLKK--THAIVILEILDGRTWSVIC--SATR----LTEGWQKFASENNLNVGDVCVFELIQKiQG 356
                          6677788888888899**********544..455899999**********..6666....*************************98677 PP

                          E..EEE CS
                   B3  90 felvvk 95 
                            ++v+
  Glyma.09G117200.1.p 357 LCFKVS 362
                          655555 PP
3B344.72.5e-144385211498
                          T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          + + +p +f+++h  ++  + ++l++ + + + W v++ +r +s     l++GW  Fv++n+L+ gD+++F+l +r+++++  +vfr
  Glyma.09G117200.1.p 438 RDVHVPMDFVRKHlVNV--K-QKLMMIHFRKKLWPVRFVVRESSTVsGNLSTGWAWFVRENELQRGDVCIFELFNREDATFDAHVFR 521
                          44789********5333..2.37***************88777766667899********************999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2158152IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-2159152IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.36659152IPR003340B3 DNA binding domain
CDDcd100172.24E-1560150No hitNo description
SMARTSM010194.3E-1461152IPR003340B3 DNA binding domain
PfamPF023623.4E-1370151IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-23268365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-23270364IPR015300DNA-binding pseudobarrel domain
CDDcd100174.41E-20274364No hitNo description
PfamPF023622.9E-15275361IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831275367IPR003340B3 DNA binding domain
SMARTSM010191.7E-13275367IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16415521IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-18417521IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-11422521No hitNo description
PROSITE profilePS5086312.633425523IPR003340B3 DNA binding domain
SMARTSM010190.0014427521IPR003340B3 DNA binding domain
PfamPF023623.9E-12431521IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MLQINISSSQ EAIALFFFFF ISFSALLSQK SHFAFTLRSH LRIHNMTSAR NKHPLPPAVH  60
FVKIILTTSL ADGILLPKKF TRKYGDGMSN PVFLKPADGT EWKIHYTKHG GEIWFQKGWK  120
EFATYYSLDH GHLLFFEYEG TSHFDVHIFD SSALEIDYPS HGTHEGKDNL VEISDDSVEI  180
LGEQFSCQNT RGSSPQPCKK MKNSITTNVE RSPNVVNLHQ HVPTISNSSQ KATFMKQMLD  240
EDDGIGIFNT EYPKVEQSTS TALKKASTFR SEHPFFRLVM KPSFINGYYL EIPPQFAERY  300
LKKTHAIVIL EILDGRTWSV ICSATRLTEG WQKFASENNL NVGDVCVFEL IQKIQGLCFK  360
VSIYQGAEEP ICPISQVHPS TNWTGGTSSQ RSSQVKSRSK LKILTIRYIA LKRASKFTSE  420
NPFFMVTLTT KLKSIITRDV HVPMDFVRKH LVNVKQKLMM IHFRKKLWPV RFVVRESSTV  480
SGNLSTGWAW FVRENELQRG DVCIFELFNR EDATFDAHVF RGHREVMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1526236835144B3 domain-containing transcription factor VRN1
4i1k_B2e-1526236835144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G117200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617263.10.0B3 domain-containing transcription factor VRN1
TrEMBLK7LDC40.0K7LDC4_SOYBN; Uncharacterized protein
STRINGGLYMA09G20150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-38B3 family protein