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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.09G116400.1.p |
| Common Name | GLYMA_09G116400, LOC100787329 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
Trihelix |
| Protein Properties |
Length: 491aa MW: 55822.4 Da PI: 7.0918 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G116400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 91.8 | 7.2e-29 | 42 | 127 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+++e++aL+++r+em+ ++++++lk+plWe+vs+k++e g++rs+k+Ckek+en+ k+++++keg+ ++ s+ +t+++f+qlea
Glyma.09G116400.1.p 42 RWPREETMALLKIRSEMDVAFKDANLKAPLWEQVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRFGK-SNGAKTYRFFEQLEA 127
8********************************************************************97.67778********85 PP
|
| 2 | trihelix | 93.6 | 1.9e-29 | 320 | 412 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
rW+k+ev aLi++r++++ + + ++ +k+plWee+s++m++ g+ rs+k+Ckekwen+nk++k+ike +k++ +++s+tcpy++
Glyma.09G116400.1.p 320 RWPKDEVEALIRLRTQIDVQAQWNNnnnnndgSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRIKEKSKRK-PQDSKTCPYYH 408
8**************88877774333345566********************************************86.9********** PP
trihelix 84 qlea 87
+lea
Glyma.09G116400.1.p 409 HLEA 412
*985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MLEISTSHET PLENADGGSA AVSDGSKAEH GEDDDRNPAA NRWPREETMA LLKIRSEMDV 60
AFKDANLKAP LWEQVSRKLS ELGYNRSAKK CKEKFENIYK YHRRTKEGRF GKSNGAKTYR 120
FFEQLEALDG NHSLLPPTTT VGDDVVLNAV PCSVSAAAHE HSSSTTSCSG KKKRKLTQFL 180
EGLMREVIEK QETLQRKFVE VLDKCEKDRM AREEAWKKEE LERIKKEREL LAQERSIAAA 240
KDEVVLAFLR KFAEAEGTVQ LLEKIQVQND KQKNMKQNGG NDNANGGGGV TVVTDMDKQE 300
CGNTNVRVSV GNFVHMSSSR WPKDEVEALI RLRTQIDVQA QWNNNNNNND GSKGPLWEEI 360
SSAMKSLGYD RSAKRCKEKW ENINKYFKRI KEKSKRKPQD SKTCPYYHHL EALYSKKPKK 420
VDHGNELKPE ELLMHIMVSQ SQEQQQEMQT QTQSPSEDAE RDQNQGDNED QSEYQTQMVD 480
NNSPSIAIMS *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF221753 | 0.0 | EF221753.1 Glycine max trihelix transcription factor (GT-2A) mRNA, complete cds. |
