PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G102900.2.p
Common NameGLYMA_09G102900, LOC100813725
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 702aa    MW: 75760 Da    PI: 6.2675
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G102900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07275295526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Glyma.09G102900.2.p 275 PCPDFRK-GACRRGDMCEYAHG 295
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.04E-196137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-188136IPR020683Ankyrin repeat-containing domain
CDDcd002041.79E-169135No hitNo description
SMARTSM0024822001040IPR002110Ankyrin repeat
PfamPF127968.3E-1053124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.5495779IPR002110Ankyrin repeat
PROSITE profilePS5029717.71457164IPR020683Ankyrin repeat-containing domain
SMARTSM002480.165787IPR002110Ankyrin repeat
PRINTSPR014158.8E-55873IPR002110Ankyrin repeat
SMARTSM002482.7E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008812.18292127IPR002110Ankyrin repeat
PRINTSPR014158.8E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6270296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4275297IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4303333IPR000571Zinc finger, CCCH-type
SMARTSM0035635305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MKNLTVHTED SFSCLLELAS NNDFEDLKLA LDRDASLINE VGLWYVRQIG SKQIVLQPRT  60
PLMVAAMYGS IDVLKLLLSC PEADVNFSCG TDKSTALHCA ALGGSVNAVD VVKLLLSAGA  120
DVSCVDANGN RPVDVLVVPP KLEGLKATLE DLLSDSTSVG SVGDCFIPVS VNSSCSDSAA  180
HLSSPENGLP FSAMASKFAD TAVNSASEKK EYPIDPSLPD IKNSIYATDE FRMFSFKVRP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCPDFR KGACRRGDMC EYAHGVFECW  300
LHPAQYRTRL CKDGTSCNRR VCFFAHTAEE LRPLYVSTGS AVPSPRSSAS TPNVMDMAAA  360
MSLFPGSPSS ISSMSPSPFA QPMSPSTSGI SHSSNAWPQP NVPALHLPGS NIQTSRLRSS  420
LSARDMPPED FDVLQDFDGQ QHLLSDLGCF SQPRPGAISV SRSGRSKTLT PSNLDELFSA  480
EISSSPRYSD PAVASVFSPR HKSTIMNQFQ QLQSSLSPIN TSVSSPRNVE HPLLQASFGV  540
SSPGRMSPRS MEPISPMSSR LSAFAQREKQ HQQLRSLSSR DLGANVPASM VGSPVNSWSN  600
WGSPHGNGKV DWSVNGNELG RLQRSSSFEL GNNGEEPDLS WVQSLVKESP SEIKEKLTGS  660
GPVASVDGPS SNPKSNPQVE SVDHSVLGAW LEQMQLDQLV V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.253420.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G102900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352810.0AC235281.1 Glycine max strain Williams 82 clone GM_WBb0050D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587172.10.0zinc finger CCCH domain-containing protein 30 isoform X1
RefseqXP_028180927.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0B2NTX80.0A0A0B2NTX8_GLYSO; Zinc finger CCCH domain-containing protein 30
TrEMBLI1L2G50.0I1L2G5_SOYBN; Uncharacterized protein
STRINGGLYMA09G15600.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]