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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.09G099000.1.p |
Common Name | GLYMA_09G099000, LOC100808889 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
DBB |
Protein Properties |
Length: 293aa MW: 31989.7 Da PI: 5.3474 |
Description |
DBB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.09G099000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 20.3 | 1.2e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e e++ C ++ lC +C ++ H H++vpl
Glyma.09G099000.1.p 4 QCNVCEAAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVPL 47
7******99*********************66899999999986 PP
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2 | zf-B_box | 26.1 | 1.8e-08 | 54 | 95 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
++kC+ ++e +fC +++ llC++C +++H H+
Glyma.09G099000.1.p 54 MPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTAnacvsdHQ 95
799*******9*********************5456666665 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSLS ASHMPKCDIC 60 QEMVGYFFCL EDRALLCRNC DVSIHTANAC VSDHQRFLLT GVRVGLEATE RGASSSSVKS 120 QSGEKMSDAK SSSISRNVSS LPQPSNANEV LPLQMQGVEE FPPSNFSGYT SGNVSQWPIE 180 EFLGLNELSQ YYNYMDGSSK ADSGKLGDSD SSVLRSGEED MDDDGFLGRV PDSSWTVPQI 240 PSPPTASGLY WPKVPQYTSD SAMSVPDICF SHVRQPHHAQ HNSNVSKRRR QL*
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Functional Description ? help
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Source |
Description |
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015039 | 1e-117 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |