PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ARR-B

Protein Properties

Length: 699aa MW: 76222.1 Da PI: 5.6535

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G098600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.4	1.6e-28	206	259	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Glyma.09G098600.1.p 206 KARVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 259 68*****************.******************************8 PP
2	Response_reg	83.5	6.4e-28	21	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ +++l+++l+k +y +v+++ ++ eal++l+e++ +Dl++ D++mp++dG++ll+ e++lp+i+++ahg+ +++ + Glyma.09G098600.1.p 21 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAVEALTMLRENRnkFDLVISDVNMPDIDGFKLLELVGL-EMDLPVIMLSAHGDTKLVMK 108 799******************.***********999889***************87754.558************* PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Glyma.09G098600.1.p 109 GVTHGACDYLLKPVRIEELKN 129 ****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	8.2E-164	1	698	IPR017053	Response regulator B-type, plant
Gene3D	G3DSA:3.40.50.2300	1.2E-42	18	152	No hit	No description
SuperFamily	SSF52172	5.69E-36	18	142	IPR011006	CheY-like superfamily
SMART	SM00448	1.4E-33	19	131	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	43.843	20	135	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	5.2E-25	21	129	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.76E-28	22	134	No hit	No description
PROSITE profile	PS51294	12.025	203	262	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-30	203	263	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-19	204	263	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	206	259	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	208	258	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MAVENQREDG GCDRFPVGMR VLAVDDDPIC LKVLENLLRK CQYHVTTTNQ AVEALTMLRE 60 NRNKFDLVIS DVNMPDIDGF KLLELVGLEM DLPVIMLSAH GDTKLVMKGV THGACDYLLK 120 PVRIEELKNI WQHVVRRKNF DSRDQNKASN EEKAPNFAGG GSQGLRSENS ADQNKRLGKK 180 RKDQSDEEEE GGEENEDDED PSAQKKARVV WSVELHRKFV AAVNQLGLDK AVPKKILDLM 240 NVEGLTRENV ASHLQKYRLY LKKAAQQANM VAALGGSDSY LRIGSIDGYG DFCTSSGSGR 300 ITNATLPSYA STGIFSRLNS PAALNMRGIS SSALIRPVQS QNINSSLNTL GNIQPSIFPA 360 NQSSSLLQGI PTSIELNQSK QRNCTTGISQ LSQVDSSGFT VASGFPDHRA TVNGPNNSLP 420 CVSNNHIMLQ GNPQTHGPGA FSNQSSVRAA SLCAESFDVG LCGSSNLLDH NRCNDNWQNA 480 AQLSKFPANS LPLCEAFSND QLPPTSINDS NSSTHIGNNS PVDFSSRMGI SVPLEDTRNE 540 LRCQEGLIGN IVQPSSYTPR QRWEEHKLDY NQNMSCPFNS VNSHASSSGV TSSMGHVLNQ 600 NNTICSNRVD ASSLVGQLNG ASPSISRCTE VEKFSSDIRL KPNEAYILEQ MKSQDGFMQN 660 TFGTLDDIMG VMVKREQNES TLLDGEMGFD AYPVGSCN*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MAVENQREDG GCDRFPVGMR VLAVDDDPIC LKVLENLLRK CQYHVTTTNQ AVEALTMLRE  60
NRNKFDLVIS DVNMPDIDGF KLLELVGLEM DLPVIMLSAH GDTKLVMKGV THGACDYLLK  120
PVRIEELKNI WQHVVRRKNF DSRDQNKASN EEKAPNFAGG GSQGLRSENS ADQNKRLGKK  180
RKDQSDEEEE GGEENEDDED PSAQKKARVV WSVELHRKFV AAVNQLGLDK AVPKKILDLM  240
NVEGLTRENV ASHLQKYRLY LKKAAQQANM VAALGGSDSY LRIGSIDGYG DFCTSSGSGR  300
ITNATLPSYA STGIFSRLNS PAALNMRGIS SSALIRPVQS QNINSSLNTL GNIQPSIFPA  360
NQSSSLLQGI PTSIELNQSK QRNCTTGISQ LSQVDSSGFT VASGFPDHRA TVNGPNNSLP  420
CVSNNHIMLQ GNPQTHGPGA FSNQSSVRAA SLCAESFDVG LCGSSNLLDH NRCNDNWQNA  480
AQLSKFPANS LPLCEAFSND QLPPTSINDS NSSTHIGNNS PVDFSSRMGI SVPLEDTRNE  540
LRCQEGLIGN IVQPSSYTPR QRWEEHKLDY NQNMSCPFNS VNSHASSSGV TSSMGHVLNQ  600
NNTICSNRVD ASSLVGQLNG ASPSISRCTE VEKFSSDIRL KPNEAYILEQ MKSQDGFMQN  660
TFGTLDDIMG VMVKREQNES TLLDGEMGFD AYPVGSCN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-24	202	265	1	64	ARR10-B
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	182	KRLGKKRKD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.39377	0.0	epicotyl\| root\| seed coat\| somatic embryo\| vegetative bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G098600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094204	0.0	BT094204.1 Soybean clone JCVI-FLGm-18G16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533888.2	0.0	two-component response regulator ARR12 isoform X1
Refseq	XP_028180904.1	0.0	two-component response regulator ARR12-like
Swissprot	Q6K8X6	1e-142	ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBL	A0A0B2P7U3	0.0	A0A0B2P7U3_GLYSO; Two-component response regulator ARR12
TrEMBL	I1L2E2	0.0	I1L2E2_SOYBN; Uncharacterized protein
STRING	GLYMA09G14650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF956	34	112
Representative plant	OGRP292	17	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-131	response regulator 12

Link Out ? help Back to Top
Phytozome	Glyma.09G098600.1.p
Entrez Gene	100807822

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]