PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G098300.1.p
Common NameGLYMA_09G098300, LOC100807286
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 491aa    MW: 51773.1 Da    PI: 6.5449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G098300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-12274319555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Glyma.09G098300.1.p 274 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 319
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17267329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-13267323No hitNo description
PROSITE profilePS5088817.39269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16271328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MQPCSREMQG LNSLLNSSSQ ISLQDLHNHT TNQIQNSHMN HQHHHQQQQQ HQQQQHQLAH  60
FDSTSHDDFL EQMLSSCSWT DLNHNKPLLW DPNTPNDIKP PDETTPSNNN DDATANVVFP  120
SFDEHSTLAS KFRNHQISPN NAPKNAAAAA FMLQHQLLRD SGLLNMPLSL PGNDVVDASS  180
FKSPNPGGEA SVQALYNGFA GSLHGAGQSS NQTQHFQNPQ GSSNPMQGQN FGAAPAGGGG  240
ATNQAPGSGA AAGGAPAQPR QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN  300
KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ADMYSEGGGD CIQANGNSNG  360
GGAHAPNSNT NQTSATTPSN DSLTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA  420
ISTATCHTRN VTVNVNPLIN AAAAAQIPTA ANPAGDGPSS PSMSVLTVQS AVAVNDGSAA  480
VKDAASVSKP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37860.0flower| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G098300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533887.20.0transcription factor bHLH66
RefseqXP_028180903.10.0transcription factor bHLH66-like
SwissprotQ9ZUG98e-91BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A445IZ490.0A0A445IZ49_GLYSO; Transcription factor bHLH66
TrEMBLI1L2E00.0I1L2E0_SOYBN; Uncharacterized protein
STRINGGLYMA09G14380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-56LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]